Select genomic region:
Overview
6.1
16.1
17.1
57.1
108.1
109.1

### Identified primary metabolite regions

c00006_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_6)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | Others_HGD_unassigned | Putative | 35,467 | 49,797 |

c00016_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_16)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | Oxidative_glycerol | Other | 6,658 | 34,302 |

c00017_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_17)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 17.1 | pdu | SCFA-other | 1 | 28,610 | Propanediol degradation S. enterica | PDU | 50%

c00057_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_57)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 57.1 | succinate2propionate | SCFA | 1 | 17,586 | Succinate to propionate B. theta | PRO | 25%

c00108_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_108)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 108.1 | Rnf_complex | E-MGC | 1 | 7,746 | Rnf complex C. sporogenes | RNF | 100%

c00109_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_109)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 109.1 | Pyruvate2acetate-formate | SCFA | 1 | 7,649 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 6.1 | Others_HGD_unassigned | Putative | 35,467 | 49,797 |
Region 16.1 | Oxidative_glycerol | Other | 6,658 | 34,302 |
Region 17.1 | pdu | SCFA-other | 1 | 28,610 | Propanediol degradation S. enterica | PDU | 50%
Region 57.1 | succinate2propionate | SCFA | 1 | 17,586 | Succinate to propionate B. theta | PRO | 25%
Region 108.1 | Rnf_complex | E-MGC | 1 | 7,746 | Rnf complex C. sporogenes | RNF | 100%
Region 109.1 | Pyruvate2acetate-formate | SCFA | 1 | 7,649 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_5)
  c00007_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_15)
  c00018_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_56)
  c00058_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_107)
  c00110_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|LKGLEBJM_184)

Compact view
c00006_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 35,467 - 49,797 nt. (total: 14,331 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00016_gnlPro.. - Region 1 - Oxidative_glycerol
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 6,658 - 34,302 nt. (total: 27,645 nt) Show pHMM detection rules used
Region on contig edge.
Oxidative_glycerol: ((Fe-ADH or Fe-ADH_2) and Dak1 and Dak2)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00017_gnlPro.. - Region 1 - pdu
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 28,610 nt. (total: 28,610 nt) Show pHMM detection rules used
Region on contig edge.
pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00057_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 17,586 nt. (total: 17,586 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00108_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 7,746 nt. (total: 7,746 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00109_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 7,649 nt. (total: 7,649 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.