Select genomic region:
Overview
11.1
16.1
17.1
18.1
72.1
86.1
133.1

### Identified primary metabolite regions

c00011_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_11)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Rnf_complex | E-MGC | 9,387 | 27,223 | Rnf complex C. sporogenes | RNF | 83%

c00016_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_16)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | Acetyl-CoA_pathway | SCFA | 2,605 | 25,587 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 52%

c00017_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_17)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 17.1 | PFOR_II_pathway | SCFA | 10,803 | 24,344 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00018_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_18)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 18.1 | Rnf_complex | E-MGC | 8,249 | 23,987 | Rnf complex C. sporogenes | RNF | 100%

c00072_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_72)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 72.1 | GR_AA_metabolism | Putative | 1 | 11,293 |

c00086_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_86)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 86.1 | Others_HGD_unassigned | Putative | 1 | 9,396 |

c00133_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_133)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 133.1 | Others_HGD_unassigned | Putative | 1 | 5,943 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 11.1 | Rnf_complex | E-MGC | 9,387 | 27,223 | Rnf complex C. sporogenes | RNF | 83%
Region 16.1 | Acetyl-CoA_pathway | SCFA | 2,605 | 25,587 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 52%
Region 17.1 | PFOR_II_pathway | SCFA | 10,803 | 24,344 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 18.1 | Rnf_complex | E-MGC | 8,249 | 23,987 | Rnf complex C. sporogenes | RNF | 100%
Region 72.1 | GR_AA_metabolism | Putative | 1 | 11,293 |
Region 86.1 | Others_HGD_unassigned | Putative | 1 | 9,396 |
Region 133.1 | Others_HGD_unassigned | Putative | 1 | 5,943 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_10)
  c00012_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_15)
  c00019_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_71)
  c00073_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_85)
  c00087_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_132)
  c00134_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_177)
  c00178_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_178)
  c00179_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_179)
  c00180_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_180)
  c00181_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_181)
  c00182_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_182)
  c00183_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_183)
  c00184_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_184)
  c00185_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_185)
  c00186_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_186)
  c00187_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_187)
  c00188_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_188)
  c00189_gnlPro.. (original name was: gnl|Prokka|FHBFGMDF_189)

Compact view
c00011_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 9,387 - 27,223 nt. (total: 17,837 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00016_gnlPro.. - Region 1 - Acetyl-CoA_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 2,605 - 25,587 nt. (total: 22,983 nt) Show pHMM detection rules used
Region on contig edge.
Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00017_gnlPro.. - Region 1 - PFOR_II_pathway
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 10,803 - 24,344 nt. (total: 13,542 nt) Show pHMM detection rules used
Region on contig edge.
PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00018_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 8,249 - 23,987 nt. (total: 15,739 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00072_gnlPro.. - Region 1 - GR_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 11,293 nt. (total: 11,293 nt) Show pHMM detection rules used
Region on contig edge.
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00086_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 9,396 nt. (total: 9,396 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00133_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 5,943 nt. (total: 5,943 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.