GCA_958349885.1 - 14 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	1	11,787	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00006_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Acetyl-CoA_pathway	SCFA	25,489	59,625	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	61%

c00009_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	Rnf_complex	E-MGC	12,343	38,877	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	14%

c00011_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Rnf_complex	E-MGC	8,213	33,224	Rnf complex C. sporogenes	RNF	100%

c00012_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	Others_HGD_unassigned	Putative	1	17,803

c00016_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_16)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	GR_eut-pdu-related	Putative	16,528	52,128	Propanediol degradation S. enterica	PDU	37%

c00030_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_30)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	GR_AA_metabolism	Putative	1	19,725

c00036_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	Putrescine2spermidine	Aliphatic_amine	3,358	26,606	Putrescine2spermidine E. rectale	SPRM	100%

c00044_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_44)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 44.1	PFOR_II_pathway	SCFA	1	16,792	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00065_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_65)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 65.1	succinate2propionate	SCFA	1	15,729	Succinate to propionate B. theta	PRO	33%

c00076_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_76)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	Fumarate2succinate	SCFA	1	13,416

c00099_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_99)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 99.1	Others_HGD_unassigned	Putative	1	9,444

c00121_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_121)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 121.1	TPP_AA_metabolism	Putative	1	6,633

c00128_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_128)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 128.1	Others_HGD_unassigned	Putative	1	6,212

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_1); c00003_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_3); c00004_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_4); c00005_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_5); c00007_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_7); c00008_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_8); c00010_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_10); c00013_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_13); c00014_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_14); c00015_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_15); c00017_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_17); c00018_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_18); c00019_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_19); c00020_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_20); c00021_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_21); c00022_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_22); c00023_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_23); c00024_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_24); c00025_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_25); c00026_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_26); c00027_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_27); c00028_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_28); c00029_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_29); c00031_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_31); c00032_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_32); c00033_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_33); c00034_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_34); c00035_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_35); c00037_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_37); c00038_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_38); c00039_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_39); c00040_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_40); c00041_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_41); c00042_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_42); c00043_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_43); c00045_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_45); c00046_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_46); c00047_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_47); c00048_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_48); c00049_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_49); c00050_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_50); c00051_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_51); c00052_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_52); c00053_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_53); c00054_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_54); c00055_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_55); c00056_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_56); c00057_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_57); c00058_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_58); c00059_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_59); c00060_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_60); c00061_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_61); c00062_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_62); c00063_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_63); c00064_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_64); c00066_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_66); c00067_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_67); c00068_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_68); c00069_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_69); c00070_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_70); c00071_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_71); c00072_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_72); c00073_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_73); c00074_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_74); c00075_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_75); c00077_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_77); c00078_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_78); c00079_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_79); c00080_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_80); c00081_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_81); c00082_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_82); c00083_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_83); c00084_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_84); c00085_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_85); c00086_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_86); c00087_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_87); c00088_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_88); c00089_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_89); c00090_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_90); c00091_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_91); c00092_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_92); c00093_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_93); c00094_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_94); c00095_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_95); c00096_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_96); c00097_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_97); c00098_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_98); c00100_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_100); c00101_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_101); c00102_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_102); c00103_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_103); c00104_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_104); c00105_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_105); c00106_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_106); c00107_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_107); c00108_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_108); c00109_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_109); c00110_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_110); c00111_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_111); c00112_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_112); c00113_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_113); c00114_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_114); c00115_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_115); c00116_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_116); c00117_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_117); c00118_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_118); c00119_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_119); c00120_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_120); c00122_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_122); c00123_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_123); c00124_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_124); c00125_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_125); c00126_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_126); c00127_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_127); c00129_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_129); c00130_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_130); c00131_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_131); c00132_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_132); c00133_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_133); c00134_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_134); c00135_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_135); c00136_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_136); c00137_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_137); c00138_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_138); c00139_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_139); c00140_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_140); c00141_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_141); c00142_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_142); c00143_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_143); c00144_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_144); c00145_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_145); c00146_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_146); c00147_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_147); c00148_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_148); c00149_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_149); c00150_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_150); c00151_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_151); c00152_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_152); c00153_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_153); c00154_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_154); c00155_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_155); c00156_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_156); c00157_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_157); c00158_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_158); c00159_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_159); c00160_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_160); c00161_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_161); c00162_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_162); c00163_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_163); c00164_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_164); c00165_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_165); c00166_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_166); c00167_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_167); c00168_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_168); c00169_gnlPro.. (original name was: gnl|Prokka|JNLOKCNI_169)

Compact view

c00002_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 11,787 nt. (total: 11,787 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00006_gnlPro.. - Region 1 - Acetyl-CoA_pathway

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Location: 25,489 - 59,625 nt. (total: 34,137 nt) Show pHMM detection rules used

Acetyl-CoA_pathway: (CdhC and CdhD and minimum(8, [CbiA, FTCD_C, FTHFS, FeS, Fer2, GCV_H, MTHFR, MTHFR_C, Prismane, Pterin_bind, Pyr_redox_2, Pyr_redox_dim, RACo_C_ter, THF_DHG_CYH, THF_DHG_CYH_C]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00009_gnlPro.. - Region 1 - Rnf_complex

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Location: 12,343 - 38,877 nt. (total: 26,535 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00011_gnlPro.. - Region 1 - Rnf_complex

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Location: 8,213 - 33,224 nt. (total: 25,012 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00012_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 17,803 nt. (total: 17,803 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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No matches found.

c00016_gnlPro.. - Region 1 - GR_eut-pdu-related

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Location: 16,528 - 52,128 nt. (total: 35,601 nt) Show pHMM detection rules used

Region on contig edge.

GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

Legend:

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c00030_gnlPro.. - Region 1 - GR_AA_metabolism

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Location: 1 - 19,725 nt. (total: 19,725 nt) Show pHMM detection rules used

Region on contig edge.

GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00036_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 3,358 - 26,606 nt. (total: 23,249 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

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Gene details

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KnownClusterBlast

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c00044_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 1 - 16,792 nt. (total: 16,792 nt) Show pHMM detection rules used

Region on contig edge.

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

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c00065_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 15,729 nt. (total: 15,729 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00076_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 13,416 nt. (total: 13,416 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00099_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 9,444 nt. (total: 9,444 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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c00121_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 6,633 nt. (total: 6,633 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00128_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 6,212 nt. (total: 6,212 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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