GCA_958402525.1 - 9 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	NADH_dehydrogenase_I	E-MGC	96,749	126,743	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00006_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Rnf_complex	E-MGC	4,553	29,668	Rnf complex C. sporogenes	RNF	83%

c00009_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_9)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 9.1	TPP_AA_metabolism	Putative	62,377	90,709

c00013_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	OD_fatty_acids	Putative	58,963	83,762

c00014_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	porA	SCFA	12,200	34,846	porA C. sporogenes	POR	60%

c00017_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Fumarate2succinate	SCFA	18,206	41,666	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00018_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Putrescine2spermidine	Aliphatic_amine	27,591	50,359	Arginine2putrescine R. gnavus	PUTR	40%

c00046_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_46)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 46.1	succinate2propionate	SCFA	4,785	22,977	Succinate to propionate A. sp. KLE1797	SUC	57%

c00048_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_48)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	Pyruvate2acetate-formate	SCFA	1	18,009	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_2); c00003_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_3); c00004_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_4); c00005_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_5); c00007_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_7); c00008_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_8); c00010_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_10); c00011_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_11); c00012_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_12); c00015_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_15); c00016_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_16); c00019_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_19); c00020_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_20); c00021_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_21); c00022_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_22); c00023_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_23); c00024_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_24); c00025_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_25); c00026_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_26); c00027_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_27); c00028_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_28); c00029_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_29); c00030_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_30); c00031_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_31); c00032_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_32); c00033_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_33); c00034_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_34); c00035_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_35); c00036_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_36); c00037_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_37); c00038_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_38); c00039_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_39); c00040_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_40); c00041_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_41); c00042_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_42); c00043_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_43); c00044_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_44); c00045_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_45); c00047_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_47); c00049_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_49); c00050_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_50); c00051_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_51); c00052_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_52); c00053_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_53); c00054_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_54); c00055_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_55); c00056_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_56); c00057_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_57); c00058_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_58); c00059_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_59); c00060_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_60); c00061_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_61); c00062_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_62); c00063_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_63); c00064_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_64); c00065_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_65); c00066_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_66); c00067_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_67); c00068_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_68); c00069_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_69); c00070_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_70); c00071_gnlPro.. (original name was: gnl|Prokka|MOHCHCLI_71)

Compact view

c00001_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 96,749 - 126,743 nt. (total: 29,995 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00006_gnlPro.. - Region 1 - Rnf_complex

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Location: 4,553 - 29,668 nt. (total: 25,116 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00009_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 62,377 - 90,709 nt. (total: 28,333 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00013_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 58,963 - 83,762 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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c00014_gnlPro.. - Region 1 - porA

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Location: 12,200 - 34,846 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00017_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 18,206 - 41,666 nt. (total: 23,461 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00018_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 27,591 - 50,359 nt. (total: 22,769 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00046_gnlPro.. - Region 1 - succinate2propionate

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Location: 4,785 - 22,977 nt. (total: 18,193 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00048_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 18,009 nt. (total: 18,009 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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