GCA_958404515.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaFCIOOOBI_2 (original name was: gnl|Prokka|FCIOOOBI_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	hydrogen-cyanide	201,008	214,244

gnlProkkaFCIOOOBI_5 (original name was: gnl|Prokka|FCIOOOBI_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	NRPS	124,023	170,988

gnlProkkaFCIOOOBI_14 (original name was: gnl|Prokka|FCIOOOBI_14)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	CDPS	24,438	45,184

Region	Type	From	To	Similarity
Region 2.1	hydrogen-cyanide	201,008	214,244
Region 5.1	NRPS	124,023	170,988
Region 14.1	CDPS	24,438	45,184

Compact view

gnlProkkaFCIOOOBI_2 - Region 1 - hydrogen-cyanide

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Location: 201,008 - 214,244 nt. (total: 13,237 nt) Show pHMM detection rules used

hydrogen-cyanide: (Fer2_4 and cds(Pyr_redox_2 and Fer2_BFD) and DAO)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaFCIOOOBI_5 - Region 1 - NRPS

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Location: 124,023 - 170,988 nt. (total: 46,966 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 124022 - 170988:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - Phe)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg5_110

Search NORINE for peptide: strict or relaxed

AMP-binding (457..855): X

nrpys: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
Large clusters prediction:: Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
Small clusters prediction:: Polar aromatic ring (Tyr, bOH-Tyr)
Single AA prediction:: tyr (Tyr)

Stachelhaus prediction details:

Stachelhaus sequence:: DALFVAAVCK
Nearest Stachelhaus code(s):: S-bohPhe or Phe DALIVAAVCK (56% 8Å match)
Stachelhaus code match:: 90% (moderate)

AMP-binding (1510..1908): Phe

nrpys: Phe

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
Large clusters prediction:: Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
Small clusters prediction:: Unpolar aromatic ring (Phe, Trp)
Single AA prediction:: phe (Phe)

Stachelhaus prediction details:

Stachelhaus sequence:: DGWLTAAVCK
Nearest Stachelhaus code(s):: Phe or Tyr DASTTAAVCK (68% 8Å match); His DSELTAEVCK (56% 8Å match)
Stachelhaus code match:: 70% (weak)

gnlProkkaFCIOOOBI_14 - Region 1 - CDPS

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Location: 24,438 - 45,184 nt. (total: 20,747 nt) Show pHMM detection rules used

CDPS: (CDPS or cycdipepsynth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.