GCA_958407265.1 - 8 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	PFOR_II_pathway	SCFA	46,908	70,465	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00004_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	NADH_dehydrogenase_I	E-MGC	37,005	67,236	NADH dehydrogenase I Bacteroides sp.	NADHD	80%

c00006_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Fumarate2succinate	SCFA	13,666	37,136	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00012_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	succinate2propionate	SCFA	20,278	44,986	Succinate to propionate B. theta	PRO	75%

c00019_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Pyruvate2acetate-formate	SCFA	1	15,751	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00028_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	porA	SCFA	2,323	25,166	porA C. sporogenes	POR	80%

c00058_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_58)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 58.1	TPP_AA_metabolism	Putative	7,913	25,091

c00071_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_71)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 71.1	Rnf_complex	E-MGC	1,705	18,759	Rnf complex C. sporogenes	RNF	83%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_1); c00003_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_3); c00005_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_5); c00007_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_7); c00008_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_8); c00009_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_9); c00010_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_10); c00011_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_11); c00013_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_13); c00014_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_14); c00015_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_15); c00016_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_16); c00017_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_17); c00018_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_18); c00020_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_20); c00021_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_21); c00022_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_22); c00023_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_23); c00024_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_24); c00025_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_25); c00026_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_26); c00027_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_27); c00029_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_29); c00030_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_30); c00031_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_31); c00032_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_32); c00033_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_33); c00034_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_34); c00035_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_35); c00036_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_36); c00037_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_37); c00038_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_38); c00039_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_39); c00040_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_40); c00041_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_41); c00042_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_42); c00043_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_43); c00044_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_44); c00045_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_45); c00046_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_46); c00047_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_47); c00048_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_48); c00049_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_49); c00050_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_50); c00051_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_51); c00052_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_52); c00053_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_53); c00054_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_54); c00055_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_55); c00056_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_56); c00057_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_57); c00059_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_59); c00060_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_60); c00061_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_61); c00062_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_62); c00063_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_63); c00064_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_64); c00065_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_65); c00066_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_66); c00067_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_67); c00068_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_68); c00069_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_69); c00070_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_70); c00072_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_72); c00073_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_73); c00074_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_74); c00075_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_75); c00076_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_76); c00077_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_77); c00078_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_78); c00079_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_79); c00080_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_80); c00081_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_81); c00082_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_82); c00083_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_83); c00084_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_84); c00085_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_85); c00086_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_86); c00087_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_87); c00088_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_88); c00089_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_89); c00090_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_90); c00091_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_91); c00092_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_92); c00093_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_93); c00094_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_94); c00095_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_95); c00096_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_96); c00097_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_97); c00098_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_98); c00099_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_99); c00100_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_100); c00101_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_101); c00102_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_102); c00103_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_103); c00104_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_104); c00105_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_105); c00106_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_106); c00107_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_107); c00108_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_108); c00109_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_109); c00110_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_110); c00111_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_111); c00112_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_112); c00113_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_113); c00114_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_114); c00115_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_115); c00116_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_116); c00117_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_117); c00118_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_118); c00119_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_119); c00120_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_120); c00121_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_121); c00122_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_122); c00123_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_123); c00124_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_124); c00125_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_125); c00126_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_126); c00127_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_127); c00128_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_128); c00129_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_129); c00130_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_130); c00131_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_131); c00132_gnlPro.. (original name was: gnl|Prokka|MDLLEMBK_132)

Compact view

c00002_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 46,908 - 70,465 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00004_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 37,005 - 67,236 nt. (total: 30,232 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00006_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 13,666 - 37,136 nt. (total: 23,471 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00012_gnlPro.. - Region 1 - succinate2propionate

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Location: 20,278 - 44,986 nt. (total: 24,709 nt) Show pHMM detection rules used

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00019_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 15,751 nt. (total: 15,751 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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c00028_gnlPro.. - Region 1 - porA

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Location: 2,323 - 25,166 nt. (total: 22,844 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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c00058_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 7,913 - 25,091 nt. (total: 17,179 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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No matches found.

c00071_gnlPro.. - Region 1 - Rnf_complex

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Location: 1,705 - 18,759 nt. (total: 17,055 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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