GCA_958408865.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaANFDJBBE_1 (original name was: gnl|Prokka|ANFDJBBE_1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RRE-containing	101,459	121,722
Region 1.2	ranthipeptide	217,608	239,215

gnlProkkaANFDJBBE_9 (original name was: gnl|Prokka|ANFDJBBE_9)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	HR-T2PKS,NRPS	1	52,248

Region	Type	From	To	Similarity
Region 1.1	RRE-containing	101,459	121,722
Region 1.2	ranthipeptide	217,608	239,215
Region 9.1	HR-T2PKS,NRPS	1	52,248

No secondary metabolite regions were found in these records:: gnlProkkaANFDJBBE_2 (original name was: gnl|Prokka|ANFDJBBE_2); gnlProkkaANFDJBBE_3 (original name was: gnl|Prokka|ANFDJBBE_3); gnlProkkaANFDJBBE_4 (original name was: gnl|Prokka|ANFDJBBE_4); gnlProkkaANFDJBBE_5 (original name was: gnl|Prokka|ANFDJBBE_5); gnlProkkaANFDJBBE_6 (original name was: gnl|Prokka|ANFDJBBE_6); gnlProkkaANFDJBBE_7 (original name was: gnl|Prokka|ANFDJBBE_7); gnlProkkaANFDJBBE_8 (original name was: gnl|Prokka|ANFDJBBE_8); gnlProkkaANFDJBBE_10 (original name was: gnl|Prokka|ANFDJBBE_10); gnlProkkaANFDJBBE_11 (original name was: gnl|Prokka|ANFDJBBE_11); gnlProkkaANFDJBBE_12 (original name was: gnl|Prokka|ANFDJBBE_12); gnlProkkaANFDJBBE_13 (original name was: gnl|Prokka|ANFDJBBE_13); gnlProkkaANFDJBBE_14 (original name was: gnl|Prokka|ANFDJBBE_14); gnlProkkaANFDJBBE_15 (original name was: gnl|Prokka|ANFDJBBE_15); gnlProkkaANFDJBBE_16 (original name was: gnl|Prokka|ANFDJBBE_16); gnlProkkaANFDJBBE_17 (original name was: gnl|Prokka|ANFDJBBE_17); gnlProkkaANFDJBBE_18 (original name was: gnl|Prokka|ANFDJBBE_18); gnlProkkaANFDJBBE_19 (original name was: gnl|Prokka|ANFDJBBE_19); gnlProkkaANFDJBBE_20 (original name was: gnl|Prokka|ANFDJBBE_20); gnlProkkaANFDJBBE_21 (original name was: gnl|Prokka|ANFDJBBE_21); gnlProkkaANFDJBBE_22 (original name was: gnl|Prokka|ANFDJBBE_22); gnlProkkaANFDJBBE_23 (original name was: gnl|Prokka|ANFDJBBE_23)

Compact view

gnlProkkaANFDJBBE_1 - Region 1 - RRE-containing

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Location: 101,459 - 121,722 nt. (total: 20,264 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaANFDJBBE_1 - Region 2 - ranthipeptide

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Location: 217,608 - 239,215 nt. (total: 21,608 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaANFDJBBE_9 - Region 1 - HR-T2PKS,NRPS

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Location: 1 - 52,248 nt. (total: 52,248 nt) Show pHMM detection rules used

Region on contig edge.

HR-T2PKS: (hr-t2pks-ksa and (t2fas or APE_KS2 or ketoacyl-synt))
NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 52248:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 33858:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile - X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 4916 - 52248:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg9_29

Search NORINE for peptide: strict or relaxed

AMP-binding (457..845): Ile

nrpys: Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASFLGGVYK
Nearest Stachelhaus code(s):: Ile DALFMGGVYK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

AMP-binding (1479..1869): X

nrpys: Asp, Asn, Glu, Gln, Aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMKNLGTVSK
Nearest Stachelhaus code(s):: Asp DMKDLGMVDK (53% 8Å match)
Stachelhaus code match:: 70% (weak)