Select genomic region:
Overview
19.1
28.1
63.1
89.1
94.1
97.1

### Identified primary metabolite regions

c00019_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_19)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 19.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 2,696 | 28,131 | Putrescine2spermidine E. rectale | SPRM | 100%

c00028_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_28)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 28.1 | Pyruvate2acetate-formate | SCFA | 1 | 19,599 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%

c00063_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_63)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 63.1 | acetate2butyrate | SCFA | 1 | 14,792 | Acetate to butyrate C. sporogenes | BUT | 83%

c00089_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_89)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 89.1 | succinate2propionate | SCFA | 1 | 10,625 | Succinate to propionate B. theta | PRO | 33%

c00094_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_94)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 94.1 | Others_HGD_unassigned | Putative | 1 | 10,140 |

c00097_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_97)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 97.1 | Rnf_complex | E-MGC | 1 | 9,876 | Rnf complex C. sporogenes | RNF | 100%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 19.1 | Arginine2putrescine,Putrescine2spermidine | Aliphatic_amine | 2,696 | 28,131 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 28.1 | Pyruvate2acetate-formate | SCFA | 1 | 19,599 | Pyruvate to acetate and formate C. acetobutylicum | PFL_acetate | 100%
Region 63.1 | acetate2butyrate | SCFA | 1 | 14,792 | Acetate to butyrate C. sporogenes | BUT | 83%
Region 89.1 | succinate2propionate | SCFA | 1 | 10,625 | Succinate to propionate B. theta | PRO | 33%
Region 94.1 | Others_HGD_unassigned | Putative | 1 | 10,140 |
Region 97.1 | Rnf_complex | E-MGC | 1 | 9,876 | Rnf complex C. sporogenes | RNF | 100%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_18)
  c00020_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_27)
  c00029_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_62)
  c00064_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_66)
  c00067_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_88)
  c00090_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_93)
  c00095_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_96)
  c00098_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_116)
  c00117_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_117)
  c00118_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_122)
  c00123_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_123)
  c00124_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_177)

Compact view
c00019_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 2,696 - 28,131 nt. (total: 25,436 nt) Show pHMM detection rules used
Region on contig edge.
Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00028_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 19,599 nt. (total: 19,599 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00063_gnlPro.. - Region 1 - acetate2butyrate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,792 nt. (total: 14,792 nt) Show pHMM detection rules used
Region on contig edge.
acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00089_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 10,625 nt. (total: 10,625 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00094_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 10,140 nt. (total: 10,140 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00097_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 9,876 nt. (total: 9,876 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.