GCA_958418105.1 - 6 region(s)

Identified primary metabolite regions

c00019_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	2,696	28,131	Putrescine2spermidine E. rectale	SPRM	100%

c00028_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_28)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 28.1	Pyruvate2acetate-formate	SCFA	1	19,599	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00063_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_63)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	acetate2butyrate	SCFA	1	14,792	Acetate to butyrate C. sporogenes	BUT	83%

c00089_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_89)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 89.1	succinate2propionate	SCFA	1	10,625	Succinate to propionate B. theta	PRO	33%

c00094_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_94)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 94.1	Others_HGD_unassigned	Putative	1	10,140

c00097_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_97)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 97.1	Rnf_complex	E-MGC	1	9,876	Rnf complex C. sporogenes	RNF	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_1); c00002_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_2); c00003_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_3); c00004_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_4); c00005_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_5); c00006_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_6); c00007_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_7); c00008_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_8); c00009_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_9); c00010_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_10); c00011_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_11); c00012_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_12); c00013_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_13); c00014_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_14); c00015_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_15); c00016_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_16); c00017_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_17); c00018_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_18); c00020_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_20); c00021_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_21); c00022_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_22); c00023_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_23); c00024_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_24); c00025_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_25); c00026_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_26); c00027_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_27); c00029_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_29); c00030_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_30); c00031_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_31); c00032_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_32); c00033_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_33); c00034_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_34); c00035_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_35); c00036_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_36); c00037_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_37); c00038_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_38); c00039_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_39); c00040_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_40); c00041_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_41); c00042_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_42); c00043_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_43); c00044_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_44); c00045_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_45); c00046_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_46); c00047_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_47); c00048_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_48); c00049_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_49); c00050_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_50); c00051_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_51); c00052_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_52); c00053_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_53); c00054_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_54); c00055_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_55); c00056_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_56); c00057_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_57); c00058_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_58); c00059_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_59); c00060_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_60); c00061_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_61); c00062_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_62); c00064_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_64); c00065_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_65); c00066_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_66); c00067_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_67); c00068_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_68); c00069_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_69); c00070_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_70); c00071_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_71); c00072_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_72); c00073_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_73); c00074_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_74); c00075_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_75); c00076_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_76); c00077_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_77); c00078_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_78); c00079_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_79); c00080_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_80); c00081_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_81); c00082_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_82); c00083_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_83); c00084_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_84); c00085_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_85); c00086_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_86); c00087_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_87); c00088_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_88); c00090_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_90); c00091_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_91); c00092_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_92); c00093_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_93); c00095_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_95); c00096_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_96); c00098_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_98); c00099_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_99); c00100_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_100); c00101_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_101); c00102_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_102); c00103_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_103); c00104_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_104); c00105_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_105); c00106_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_106); c00107_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_107); c00108_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_108); c00109_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_109); c00110_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_110); c00111_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_111); c00112_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_112); c00113_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_113); c00114_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_114); c00115_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_115); c00116_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_116); c00117_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_117); c00118_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_118); c00119_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_119); c00120_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_120); c00121_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_121); c00122_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_122); c00123_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_123); c00124_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_124); c00125_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_125); c00126_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_126); c00127_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_127); c00128_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_128); c00129_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_129); c00130_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_130); c00131_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_131); c00132_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_132); c00133_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_133); c00134_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_134); c00135_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_135); c00136_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_136); c00137_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_137); c00138_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_138); c00139_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_139); c00140_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_140); c00141_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_141); c00142_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_142); c00143_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_143); c00144_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_144); c00145_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_145); c00146_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_146); c00147_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_147); c00148_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_148); c00149_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_149); c00150_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_150); c00151_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_151); c00152_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_152); c00153_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_153); c00154_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_154); c00155_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_155); c00156_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_156); c00157_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_157); c00158_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_158); c00159_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_159); c00160_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_160); c00161_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_161); c00162_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_162); c00163_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_163); c00164_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_164); c00165_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_165); c00166_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_166); c00167_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_167); c00168_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_168); c00169_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_169); c00170_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_170); c00171_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_171); c00172_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_172); c00173_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_173); c00174_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_174); c00175_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_175); c00176_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_176); c00177_gnlPro.. (original name was: gnl|Prokka|NCNKIAFH_177)

Compact view

c00019_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 2,696 - 28,131 nt. (total: 25,436 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00028_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 19,599 nt. (total: 19,599 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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c00063_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 14,792 nt. (total: 14,792 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

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c00089_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 10,625 nt. (total: 10,625 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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electron transport genes

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c00094_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 10,140 nt. (total: 10,140 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00097_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 9,876 nt. (total: 9,876 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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Gene details

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