GCA_958427305.1 - 9 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	19,717	43,177	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00013_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	40,004	55,255	Rnf complex C. sporogenes	RNF	83%

c00017_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Putrescine2spermidine	Aliphatic_amine	22,351	45,119	Arginine2putrescine R. gnavus	PUTR	40%

c00019_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	Pyruvate2acetate-formate	SCFA	26,960	48,335	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00024_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	NADH_dehydrogenase_I	E-MGC	13,816	43,810	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00034_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_34)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	TPP_AA_metabolism	Putative	16,321	34,786

c00035_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_35)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 35.1	porA	SCFA	1	21,860	porA C. sporogenes	POR	60%

c00037_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_37)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 37.1	OD_fatty_acids	Putative	1	23,557

c00045_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_45)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	succinate2propionate	SCFA	4,803	22,764	Succinate to propionate A. sp. KLE1797	SUC	57%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_1); c00003_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_3); c00004_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_4); c00005_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_5); c00006_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_6); c00007_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_7); c00008_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_8); c00009_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_9); c00010_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_10); c00011_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_11); c00012_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_12); c00014_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_14); c00015_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_15); c00016_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_16); c00018_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_18); c00020_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_20); c00021_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_21); c00022_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_22); c00023_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_23); c00025_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_25); c00026_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_26); c00027_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_27); c00028_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_28); c00029_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_29); c00030_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_30); c00031_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_31); c00032_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_32); c00033_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_33); c00036_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_36); c00038_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_38); c00039_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_39); c00040_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_40); c00041_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_41); c00042_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_42); c00043_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_43); c00044_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_44); c00046_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_46); c00047_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_47); c00048_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_48); c00049_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_49); c00050_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_50); c00051_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_51); c00052_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_52); c00053_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_53); c00054_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_54); c00055_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_55); c00056_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_56); c00057_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_57); c00058_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_58); c00059_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_59); c00060_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_60); c00061_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_61); c00062_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_62); c00063_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_63); c00064_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_64); c00065_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_65); c00066_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_66); c00067_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_67); c00068_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_68); c00069_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_69); c00070_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_70); c00071_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_71); c00072_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_72); c00073_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_73); c00074_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_74); c00075_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_75); c00076_gnlPro.. (original name was: gnl|Prokka|LLBGDOPG_76)

Compact view

c00002_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 19,717 - 43,177 nt. (total: 23,461 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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additional biosynthetic genes

transport-related genes

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c00013_gnlPro.. - Region 1 - Rnf_complex

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Location: 40,004 - 55,255 nt. (total: 15,252 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

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c00017_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 22,351 - 45,119 nt. (total: 22,769 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

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resistance genes

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c00019_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 26,960 - 48,335 nt. (total: 21,376 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00024_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 13,816 - 43,810 nt. (total: 29,995 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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c00034_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 16,321 - 34,786 nt. (total: 18,466 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00035_gnlPro.. - Region 1 - porA

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Location: 1 - 21,860 nt. (total: 21,860 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00037_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 1 - 23,557 nt. (total: 23,557 nt) Show pHMM detection rules used

Region on contig edge.

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

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c00045_gnlPro.. - Region 1 - succinate2propionate

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Location: 4,803 - 22,764 nt. (total: 17,962 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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