GCA_958432145.1 - 9 region(s)

Identified primary metabolite regions

c00002_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_2)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Rnf_complex	E-MGC	52,155	77,270	Rnf complex C. sporogenes	RNF	83%

c00004_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	NADH_dehydrogenase_I	E-MGC	142,934	172,928	NADH dehydrogenase I Bacteroides sp.	NADHD	47%

c00006_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Putrescine2spermidine	Aliphatic_amine	13,665	36,422	Arginine2putrescine R. gnavus	PUTR	40%

c00007_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	OD_fatty_acids	Putative	35,430	60,229

c00011_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	succinate2propionate	SCFA	1	19,594	Succinate to propionate A. sp. KLE1797	SUC	57%

c00017_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	porA	SCFA	10,781	33,427	porA C. sporogenes	POR	60%

c00019_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_19)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 19.1	TPP_AA_metabolism	Putative	23,305	51,636

c00021_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_21)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 21.1	Fumarate2succinate	SCFA	8,435	31,850	Fumarate to succinate B. thetaiotaomicron	SUC	100%

c00026_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_26)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Pyruvate2acetate-formate	SCFA	14,086	37,135	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_1); c00003_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_3); c00005_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_5); c00008_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_8); c00009_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_9); c00010_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_10); c00012_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_12); c00013_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_13); c00014_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_14); c00015_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_15); c00016_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_16); c00018_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_18); c00020_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_20); c00022_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_22); c00023_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_23); c00024_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_24); c00025_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_25); c00027_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_27); c00028_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_28); c00029_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_29); c00030_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_30); c00031_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_31); c00032_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_32); c00033_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_33); c00034_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_34); c00035_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_35); c00036_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_36); c00037_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_37); c00038_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_38); c00039_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_39); c00040_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_40); c00041_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_41); c00042_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_42); c00043_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_43); c00044_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_44); c00045_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_45); c00046_gnlPro.. (original name was: gnl|Prokka|MEDPMIKA_46)

Compact view

c00002_gnlPro.. - Region 1 - Rnf_complex

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Location: 52,155 - 77,270 nt. (total: 25,116 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00004_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 142,934 - 172,928 nt. (total: 29,995 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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transport-related genes

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c00006_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 13,665 - 36,422 nt. (total: 22,758 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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resistance genes

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c00007_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 35,430 - 60,229 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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No matches found.

c00011_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 19,594 nt. (total: 19,594 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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resistance genes

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c00017_gnlPro.. - Region 1 - porA

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Location: 10,781 - 33,427 nt. (total: 22,647 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00019_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 23,305 - 51,636 nt. (total: 28,332 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00021_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 8,435 - 31,850 nt. (total: 23,416 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00026_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 14,086 - 37,135 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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