GCA_958443035.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNAMAOLGB_4 (original name was: gnl|Prokka|NAMAOLGB_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	123,996	144,349	polysaccharide C	Saccharide	20%

gnlProkkaNAMAOLGB_5 (original name was: gnl|Prokka|NAMAOLGB_5)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	phosphonate	1	7,816	polysaccharide B	Saccharide	13%

gnlProkkaNAMAOLGB_10 (original name was: gnl|Prokka|NAMAOLGB_10)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	phosphonate	1,294	29,501	polysaccharide A	Saccharide	40%

gnlProkkaNAMAOLGB_15 (original name was: gnl|Prokka|NAMAOLGB_15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS-like	36,492	78,921

gnlProkkaNAMAOLGB_18 (original name was: gnl|Prokka|NAMAOLGB_18)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	phosphonate	11,764	35,627	polysaccharide B	Saccharide	30%

No secondary metabolite regions were found in these records:: gnlProkkaNAMAOLGB_1 (original name was: gnl|Prokka|NAMAOLGB_1); gnlProkkaNAMAOLGB_2 (original name was: gnl|Prokka|NAMAOLGB_2); gnlProkkaNAMAOLGB_3 (original name was: gnl|Prokka|NAMAOLGB_3); gnlProkkaNAMAOLGB_6 (original name was: gnl|Prokka|NAMAOLGB_6); gnlProkkaNAMAOLGB_7 (original name was: gnl|Prokka|NAMAOLGB_7); gnlProkkaNAMAOLGB_8 (original name was: gnl|Prokka|NAMAOLGB_8); gnlProkkaNAMAOLGB_9 (original name was: gnl|Prokka|NAMAOLGB_9); gnlProkkaNAMAOLGB_11 (original name was: gnl|Prokka|NAMAOLGB_11); gnlProkkaNAMAOLGB_12 (original name was: gnl|Prokka|NAMAOLGB_12); gnlProkkaNAMAOLGB_13 (original name was: gnl|Prokka|NAMAOLGB_13); gnlProkkaNAMAOLGB_14 (original name was: gnl|Prokka|NAMAOLGB_14); gnlProkkaNAMAOLGB_16 (original name was: gnl|Prokka|NAMAOLGB_16); gnlProkkaNAMAOLGB_17 (original name was: gnl|Prokka|NAMAOLGB_17); gnlProkkaNAMAOLGB_19 (original name was: gnl|Prokka|NAMAOLGB_19); gnlProkkaNAMAOLGB_20 (original name was: gnl|Prokka|NAMAOLGB_20); gnlProkkaNAMAOLGB_21 (original name was: gnl|Prokka|NAMAOLGB_21); gnlProkkaNAMAOLGB_22 (original name was: gnl|Prokka|NAMAOLGB_22); gnlProkkaNAMAOLGB_23 (original name was: gnl|Prokka|NAMAOLGB_23); gnlProkkaNAMAOLGB_24 (original name was: gnl|Prokka|NAMAOLGB_24); gnlProkkaNAMAOLGB_25 (original name was: gnl|Prokka|NAMAOLGB_25); gnlProkkaNAMAOLGB_26 (original name was: gnl|Prokka|NAMAOLGB_26); gnlProkkaNAMAOLGB_27 (original name was: gnl|Prokka|NAMAOLGB_27); gnlProkkaNAMAOLGB_28 (original name was: gnl|Prokka|NAMAOLGB_28); gnlProkkaNAMAOLGB_29 (original name was: gnl|Prokka|NAMAOLGB_29); gnlProkkaNAMAOLGB_30 (original name was: gnl|Prokka|NAMAOLGB_30); gnlProkkaNAMAOLGB_31 (original name was: gnl|Prokka|NAMAOLGB_31); gnlProkkaNAMAOLGB_32 (original name was: gnl|Prokka|NAMAOLGB_32); gnlProkkaNAMAOLGB_33 (original name was: gnl|Prokka|NAMAOLGB_33); gnlProkkaNAMAOLGB_34 (original name was: gnl|Prokka|NAMAOLGB_34); gnlProkkaNAMAOLGB_35 (original name was: gnl|Prokka|NAMAOLGB_35); gnlProkkaNAMAOLGB_36 (original name was: gnl|Prokka|NAMAOLGB_36); gnlProkkaNAMAOLGB_37 (original name was: gnl|Prokka|NAMAOLGB_37); gnlProkkaNAMAOLGB_38 (original name was: gnl|Prokka|NAMAOLGB_38); gnlProkkaNAMAOLGB_39 (original name was: gnl|Prokka|NAMAOLGB_39); gnlProkkaNAMAOLGB_40 (original name was: gnl|Prokka|NAMAOLGB_40); gnlProkkaNAMAOLGB_41 (original name was: gnl|Prokka|NAMAOLGB_41); gnlProkkaNAMAOLGB_42 (original name was: gnl|Prokka|NAMAOLGB_42); gnlProkkaNAMAOLGB_43 (original name was: gnl|Prokka|NAMAOLGB_43); gnlProkkaNAMAOLGB_44 (original name was: gnl|Prokka|NAMAOLGB_44); gnlProkkaNAMAOLGB_45 (original name was: gnl|Prokka|NAMAOLGB_45); gnlProkkaNAMAOLGB_46 (original name was: gnl|Prokka|NAMAOLGB_46); gnlProkkaNAMAOLGB_47 (original name was: gnl|Prokka|NAMAOLGB_47); gnlProkkaNAMAOLGB_48 (original name was: gnl|Prokka|NAMAOLGB_48); gnlProkkaNAMAOLGB_49 (original name was: gnl|Prokka|NAMAOLGB_49); gnlProkkaNAMAOLGB_50 (original name was: gnl|Prokka|NAMAOLGB_50); gnlProkkaNAMAOLGB_51 (original name was: gnl|Prokka|NAMAOLGB_51); gnlProkkaNAMAOLGB_52 (original name was: gnl|Prokka|NAMAOLGB_52); gnlProkkaNAMAOLGB_53 (original name was: gnl|Prokka|NAMAOLGB_53); gnlProkkaNAMAOLGB_54 (original name was: gnl|Prokka|NAMAOLGB_54); gnlProkkaNAMAOLGB_55 (original name was: gnl|Prokka|NAMAOLGB_55); gnlProkkaNAMAOLGB_56 (original name was: gnl|Prokka|NAMAOLGB_56); gnlProkkaNAMAOLGB_57 (original name was: gnl|Prokka|NAMAOLGB_57); gnlProkkaNAMAOLGB_58 (original name was: gnl|Prokka|NAMAOLGB_58); gnlProkkaNAMAOLGB_59 (original name was: gnl|Prokka|NAMAOLGB_59); gnlProkkaNAMAOLGB_60 (original name was: gnl|Prokka|NAMAOLGB_60); gnlProkkaNAMAOLGB_61 (original name was: gnl|Prokka|NAMAOLGB_61); gnlProkkaNAMAOLGB_62 (original name was: gnl|Prokka|NAMAOLGB_62); gnlProkkaNAMAOLGB_63 (original name was: gnl|Prokka|NAMAOLGB_63); gnlProkkaNAMAOLGB_64 (original name was: gnl|Prokka|NAMAOLGB_64); gnlProkkaNAMAOLGB_65 (original name was: gnl|Prokka|NAMAOLGB_65); gnlProkkaNAMAOLGB_66 (original name was: gnl|Prokka|NAMAOLGB_66); gnlProkkaNAMAOLGB_67 (original name was: gnl|Prokka|NAMAOLGB_67); gnlProkkaNAMAOLGB_68 (original name was: gnl|Prokka|NAMAOLGB_68); gnlProkkaNAMAOLGB_69 (original name was: gnl|Prokka|NAMAOLGB_69); gnlProkkaNAMAOLGB_70 (original name was: gnl|Prokka|NAMAOLGB_70); gnlProkkaNAMAOLGB_71 (original name was: gnl|Prokka|NAMAOLGB_71); gnlProkkaNAMAOLGB_72 (original name was: gnl|Prokka|NAMAOLGB_72); gnlProkkaNAMAOLGB_73 (original name was: gnl|Prokka|NAMAOLGB_73); gnlProkkaNAMAOLGB_74 (original name was: gnl|Prokka|NAMAOLGB_74); gnlProkkaNAMAOLGB_75 (original name was: gnl|Prokka|NAMAOLGB_75); gnlProkkaNAMAOLGB_76 (original name was: gnl|Prokka|NAMAOLGB_76); gnlProkkaNAMAOLGB_77 (original name was: gnl|Prokka|NAMAOLGB_77); gnlProkkaNAMAOLGB_78 (original name was: gnl|Prokka|NAMAOLGB_78); gnlProkkaNAMAOLGB_79 (original name was: gnl|Prokka|NAMAOLGB_79)

Compact view

gnlProkkaNAMAOLGB_4 - Region 1 - RRE-containing

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Location: 123,996 - 144,349 nt. (total: 20,354 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNAMAOLGB_5 - Region 1 - phosphonate

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Location: 1 - 7,816 nt. (total: 7,816 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

gnlProkkaNAMAOLGB_10 - Region 1 - phosphonate

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Location: 1,294 - 29,501 nt. (total: 28,208 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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gnlProkkaNAMAOLGB_15 - Region 1 - NRPS-like

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Location: 36,492 - 78,921 nt. (total: 42,430 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

No matches found.

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 36491 - 78921:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg15_59

AMP-binding (12..401): X

nrpys: Leu, Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALFLGVVLK
Nearest Stachelhaus code(s):: Leu or Ile DAIYLGVVLK (59% 8Å match); aIle DALVFGVVLK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

gnlProkkaNAMAOLGB_18 - Region 1 - phosphonate

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Location: 11,764 - 35,627 nt. (total: 23,864 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

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core biosynthetic genes

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regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
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Similar known gene clusters from MIBiG 3.1