GCA_958443035.1 - 9 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	Rnf_complex	E-MGC	4,974	30,074	Rnf complex C. sporogenes	RNF	83%

c00006_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_6)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	NADH_dehydrogenase_I	E-MGC	34,394	64,330	NADH dehydrogenase I Bacteroides sp.	NADHD	100%

c00008_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_8)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	porA	SCFA	87,180	110,104	porA C. sporogenes	POR	80%

c00012_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_12)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	8,829	35,430

c00013_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	succinate2propionate	SCFA	93,521	111,170	Succinate to propionate B. theta	PRO	58%

c00014_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	PFOR_II_pathway	SCFA	47,514	71,068	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00024_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	Pyruvate2acetate-formate	SCFA	1	13,325	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%
Region 24.2	TPP_fatty_acids	Putative	16,017	41,892

c00077_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_77)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 77.1	Fumarate2succinate	SCFA	1	3,796	Fumarate to succinate B. thetaiotaomicron	SUC	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_1); c00002_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_2); c00003_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_3); c00004_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_4); c00007_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_7); c00009_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_9); c00010_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_10); c00011_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_11); c00015_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_15); c00016_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_16); c00017_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_17); c00018_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_18); c00019_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_19); c00020_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_20); c00021_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_21); c00022_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_22); c00023_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_23); c00025_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_25); c00026_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_26); c00027_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_27); c00028_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_28); c00029_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_29); c00030_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_30); c00031_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_31); c00032_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_32); c00033_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_33); c00034_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_34); c00035_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_35); c00036_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_36); c00037_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_37); c00038_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_38); c00039_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_39); c00040_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_40); c00041_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_41); c00042_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_42); c00043_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_43); c00044_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_44); c00045_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_45); c00046_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_46); c00047_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_47); c00048_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_48); c00049_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_49); c00050_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_50); c00051_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_51); c00052_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_52); c00053_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_53); c00054_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_54); c00055_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_55); c00056_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_56); c00057_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_57); c00058_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_58); c00059_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_59); c00060_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_60); c00061_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_61); c00062_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_62); c00063_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_63); c00064_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_64); c00065_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_65); c00066_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_66); c00067_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_67); c00068_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_68); c00069_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_69); c00070_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_70); c00071_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_71); c00072_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_72); c00073_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_73); c00074_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_74); c00075_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_75); c00076_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_76); c00078_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_78); c00079_gnlPro.. (original name was: gnl|Prokka|NAMAOLGB_79)

Compact view

c00005_gnlPro.. - Region 1 - Rnf_complex

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Location: 4,974 - 30,074 nt. (total: 25,101 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00006_gnlPro.. - Region 1 - NADH_dehydrogenase_I

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Location: 34,394 - 64,330 nt. (total: 29,937 nt) Show pHMM detection rules used

NADH_dehydrogenase_I: (Oxidored_q4 and Oxidored_q6 and Complex1_30kDa and Complex1_49kDa and NADHdh and Oxidored_q3 and Oxidored_q2 and minimum(4, [Fe-2S_thioredx, Fer2_4, Fer4_7, Molybdop_Fe4S4, Molydop_binding, NADH-G_4Fe-4S_3, NADH_4Fe-4S, Proton_antipo_M, Proton_antipo_N, SLBB]))

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c00008_gnlPro.. - Region 1 - porA

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Location: 87,180 - 110,104 nt. (total: 22,925 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00012_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 8,829 - 35,430 nt. (total: 26,602 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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No matches found.

c00013_gnlPro.. - Region 1 - succinate2propionate

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Location: 93,521 - 111,170 nt. (total: 17,650 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

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c00014_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 47,514 - 71,068 nt. (total: 23,555 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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c00024_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 13,325 nt. (total: 13,325 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00024_gnlPro.. - Region 2 - TPP_fatty_acids

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Location: 16,017 - 41,892 nt. (total: 25,876 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

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c00077_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 3,796 nt. (total: 3,796 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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