GCA_958443335.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaPAGGOGBC_2 (original name was: gnl|Prokka|PAGGOGBC_2)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	ranthipeptide	98,429	120,036

gnlProkkaPAGGOGBC_4 (original name was: gnl|Prokka|PAGGOGBC_4)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RRE-containing	33,058	53,321

gnlProkkaPAGGOGBC_12 (original name was: gnl|Prokka|PAGGOGBC_12)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	HR-T2PKS	14,057	45,019

gnlProkkaPAGGOGBC_60 (original name was: gnl|Prokka|PAGGOGBC_60)

Region	Type	From	To	Most similar known cluster		Similarity
Region 60.1	NRPS	1	5,974

gnlProkkaPAGGOGBC_92 (original name was: gnl|Prokka|PAGGOGBC_92)

Region	Type	From	To	Most similar known cluster		Similarity
Region 92.1	NRPS-like	1	2,561

Region	Type	From	To	Similarity
Region 2.1	ranthipeptide	98,429	120,036
Region 4.1	RRE-containing	33,058	53,321
Region 12.1	HR-T2PKS	14,057	45,019
Region 60.1	NRPS	1	5,974
Region 92.1	NRPS-like	1	2,561

No secondary metabolite regions were found in these records:: gnlProkkaPAGGOGBC_1 (original name was: gnl|Prokka|PAGGOGBC_1); gnlProkkaPAGGOGBC_3 (original name was: gnl|Prokka|PAGGOGBC_3); gnlProkkaPAGGOGBC_5 (original name was: gnl|Prokka|PAGGOGBC_5); gnlProkkaPAGGOGBC_6 (original name was: gnl|Prokka|PAGGOGBC_6); gnlProkkaPAGGOGBC_7 (original name was: gnl|Prokka|PAGGOGBC_7); gnlProkkaPAGGOGBC_8 (original name was: gnl|Prokka|PAGGOGBC_8); gnlProkkaPAGGOGBC_9 (original name was: gnl|Prokka|PAGGOGBC_9); gnlProkkaPAGGOGBC_10 (original name was: gnl|Prokka|PAGGOGBC_10); gnlProkkaPAGGOGBC_11 (original name was: gnl|Prokka|PAGGOGBC_11); gnlProkkaPAGGOGBC_13 (original name was: gnl|Prokka|PAGGOGBC_13); gnlProkkaPAGGOGBC_14 (original name was: gnl|Prokka|PAGGOGBC_14); gnlProkkaPAGGOGBC_15 (original name was: gnl|Prokka|PAGGOGBC_15); gnlProkkaPAGGOGBC_16 (original name was: gnl|Prokka|PAGGOGBC_16); gnlProkkaPAGGOGBC_17 (original name was: gnl|Prokka|PAGGOGBC_17); gnlProkkaPAGGOGBC_18 (original name was: gnl|Prokka|PAGGOGBC_18); gnlProkkaPAGGOGBC_19 (original name was: gnl|Prokka|PAGGOGBC_19); gnlProkkaPAGGOGBC_20 (original name was: gnl|Prokka|PAGGOGBC_20); gnlProkkaPAGGOGBC_21 (original name was: gnl|Prokka|PAGGOGBC_21); gnlProkkaPAGGOGBC_22 (original name was: gnl|Prokka|PAGGOGBC_22); gnlProkkaPAGGOGBC_23 (original name was: gnl|Prokka|PAGGOGBC_23); gnlProkkaPAGGOGBC_24 (original name was: gnl|Prokka|PAGGOGBC_24); gnlProkkaPAGGOGBC_25 (original name was: gnl|Prokka|PAGGOGBC_25); gnlProkkaPAGGOGBC_26 (original name was: gnl|Prokka|PAGGOGBC_26); gnlProkkaPAGGOGBC_27 (original name was: gnl|Prokka|PAGGOGBC_27); gnlProkkaPAGGOGBC_28 (original name was: gnl|Prokka|PAGGOGBC_28); gnlProkkaPAGGOGBC_29 (original name was: gnl|Prokka|PAGGOGBC_29); gnlProkkaPAGGOGBC_30 (original name was: gnl|Prokka|PAGGOGBC_30); gnlProkkaPAGGOGBC_31 (original name was: gnl|Prokka|PAGGOGBC_31); gnlProkkaPAGGOGBC_32 (original name was: gnl|Prokka|PAGGOGBC_32); gnlProkkaPAGGOGBC_33 (original name was: gnl|Prokka|PAGGOGBC_33); gnlProkkaPAGGOGBC_34 (original name was: gnl|Prokka|PAGGOGBC_34); gnlProkkaPAGGOGBC_35 (original name was: gnl|Prokka|PAGGOGBC_35); gnlProkkaPAGGOGBC_36 (original name was: gnl|Prokka|PAGGOGBC_36); gnlProkkaPAGGOGBC_37 (original name was: gnl|Prokka|PAGGOGBC_37); gnlProkkaPAGGOGBC_38 (original name was: gnl|Prokka|PAGGOGBC_38); gnlProkkaPAGGOGBC_39 (original name was: gnl|Prokka|PAGGOGBC_39); gnlProkkaPAGGOGBC_40 (original name was: gnl|Prokka|PAGGOGBC_40); gnlProkkaPAGGOGBC_41 (original name was: gnl|Prokka|PAGGOGBC_41); gnlProkkaPAGGOGBC_42 (original name was: gnl|Prokka|PAGGOGBC_42); gnlProkkaPAGGOGBC_43 (original name was: gnl|Prokka|PAGGOGBC_43); gnlProkkaPAGGOGBC_44 (original name was: gnl|Prokka|PAGGOGBC_44); gnlProkkaPAGGOGBC_45 (original name was: gnl|Prokka|PAGGOGBC_45); gnlProkkaPAGGOGBC_46 (original name was: gnl|Prokka|PAGGOGBC_46); gnlProkkaPAGGOGBC_47 (original name was: gnl|Prokka|PAGGOGBC_47); gnlProkkaPAGGOGBC_48 (original name was: gnl|Prokka|PAGGOGBC_48); gnlProkkaPAGGOGBC_49 (original name was: gnl|Prokka|PAGGOGBC_49); gnlProkkaPAGGOGBC_50 (original name was: gnl|Prokka|PAGGOGBC_50); gnlProkkaPAGGOGBC_51 (original name was: gnl|Prokka|PAGGOGBC_51); gnlProkkaPAGGOGBC_52 (original name was: gnl|Prokka|PAGGOGBC_52); gnlProkkaPAGGOGBC_53 (original name was: gnl|Prokka|PAGGOGBC_53); gnlProkkaPAGGOGBC_54 (original name was: gnl|Prokka|PAGGOGBC_54); gnlProkkaPAGGOGBC_55 (original name was: gnl|Prokka|PAGGOGBC_55); gnlProkkaPAGGOGBC_56 (original name was: gnl|Prokka|PAGGOGBC_56); gnlProkkaPAGGOGBC_57 (original name was: gnl|Prokka|PAGGOGBC_57); gnlProkkaPAGGOGBC_58 (original name was: gnl|Prokka|PAGGOGBC_58); gnlProkkaPAGGOGBC_59 (original name was: gnl|Prokka|PAGGOGBC_59); gnlProkkaPAGGOGBC_61 (original name was: gnl|Prokka|PAGGOGBC_61); gnlProkkaPAGGOGBC_62 (original name was: gnl|Prokka|PAGGOGBC_62); gnlProkkaPAGGOGBC_63 (original name was: gnl|Prokka|PAGGOGBC_63); gnlProkkaPAGGOGBC_64 (original name was: gnl|Prokka|PAGGOGBC_64); gnlProkkaPAGGOGBC_65 (original name was: gnl|Prokka|PAGGOGBC_65); gnlProkkaPAGGOGBC_66 (original name was: gnl|Prokka|PAGGOGBC_66); gnlProkkaPAGGOGBC_67 (original name was: gnl|Prokka|PAGGOGBC_67); gnlProkkaPAGGOGBC_68 (original name was: gnl|Prokka|PAGGOGBC_68); gnlProkkaPAGGOGBC_69 (original name was: gnl|Prokka|PAGGOGBC_69); gnlProkkaPAGGOGBC_70 (original name was: gnl|Prokka|PAGGOGBC_70); gnlProkkaPAGGOGBC_71 (original name was: gnl|Prokka|PAGGOGBC_71); gnlProkkaPAGGOGBC_72 (original name was: gnl|Prokka|PAGGOGBC_72); gnlProkkaPAGGOGBC_73 (original name was: gnl|Prokka|PAGGOGBC_73); gnlProkkaPAGGOGBC_74 (original name was: gnl|Prokka|PAGGOGBC_74); gnlProkkaPAGGOGBC_75 (original name was: gnl|Prokka|PAGGOGBC_75); gnlProkkaPAGGOGBC_76 (original name was: gnl|Prokka|PAGGOGBC_76); gnlProkkaPAGGOGBC_77 (original name was: gnl|Prokka|PAGGOGBC_77); gnlProkkaPAGGOGBC_78 (original name was: gnl|Prokka|PAGGOGBC_78); gnlProkkaPAGGOGBC_79 (original name was: gnl|Prokka|PAGGOGBC_79); gnlProkkaPAGGOGBC_80 (original name was: gnl|Prokka|PAGGOGBC_80); gnlProkkaPAGGOGBC_81 (original name was: gnl|Prokka|PAGGOGBC_81); gnlProkkaPAGGOGBC_82 (original name was: gnl|Prokka|PAGGOGBC_82); gnlProkkaPAGGOGBC_83 (original name was: gnl|Prokka|PAGGOGBC_83); gnlProkkaPAGGOGBC_84 (original name was: gnl|Prokka|PAGGOGBC_84); gnlProkkaPAGGOGBC_85 (original name was: gnl|Prokka|PAGGOGBC_85); gnlProkkaPAGGOGBC_86 (original name was: gnl|Prokka|PAGGOGBC_86); gnlProkkaPAGGOGBC_87 (original name was: gnl|Prokka|PAGGOGBC_87); gnlProkkaPAGGOGBC_88 (original name was: gnl|Prokka|PAGGOGBC_88); gnlProkkaPAGGOGBC_89 (original name was: gnl|Prokka|PAGGOGBC_89); gnlProkkaPAGGOGBC_90 (original name was: gnl|Prokka|PAGGOGBC_90); gnlProkkaPAGGOGBC_91 (original name was: gnl|Prokka|PAGGOGBC_91); gnlProkkaPAGGOGBC_93 (original name was: gnl|Prokka|PAGGOGBC_93); gnlProkkaPAGGOGBC_94 (original name was: gnl|Prokka|PAGGOGBC_94)

Compact view

gnlProkkaPAGGOGBC_2 - Region 1 - ranthipeptide

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Location: 98,429 - 120,036 nt. (total: 21,608 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPAGGOGBC_4 - Region 1 - RRE-containing

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Location: 33,058 - 53,321 nt. (total: 20,264 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPAGGOGBC_12 - Region 1 - HR-T2PKS

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Location: 14,057 - 45,019 nt. (total: 30,963 nt) Show pHMM detection rules used

Region on contig edge.

HR-T2PKS: (hr-t2pks-ksa and (t2fas or APE_KS2 or ketoacyl-synt))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaPAGGOGBC_60 - Region 1 - NRPS

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Location: 1 - 5,974 nt. (total: 5,974 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

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resistance

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Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 5974:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg60_1

Search NORINE for peptide: strict or relaxed

AMP-binding (457..845): Ile

nrpys: Ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASFLGGVYK
Nearest Stachelhaus code(s):: Ile DALFMGGVYK (56% 8Å match)
Stachelhaus code match:: 80% (moderate)

AMP-binding (1479..1756): X

nrpys: (unknown)

SVM prediction details:

NOTE: uncertain match

Predicted physicochemical class:: hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMKNLG---K
Nearest Stachelhaus code(s):: OH-Orn DMENLGLINK (32% 8Å match)
Stachelhaus code match:: 60% (weak)

gnlProkkaPAGGOGBC_92 - Region 1 - NRPS-like

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Location: 1 - 2,561 nt. (total: 2,561 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.