GCA_958446235.1 - 2 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaNMIMCLMO_181 (original name was: gnl|Prokka|NMIMCLMO_181)

Region	Type	From	To	Most similar known cluster		Similarity
Region 181.1	cyclic-lactone-autoinducer	1	4,036

gnlProkkaNMIMCLMO_297 (original name was: gnl|Prokka|NMIMCLMO_297)

Region	Type	From	To	Most similar known cluster		Similarity
Region 297.1	NRPS	1	3,373	dipeptide aldehydes	NRP	11%

Region	Type	From	To	Most similar known cluster	Similarity
Region 181.1	cyclic-lactone-autoinducer	1	4,036
Region 297.1	NRPS	1	3,373	dipeptide aldehydes	NRP	11%

Compact view

gnlProkkaNMIMCLMO_181 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 4,036 nt. (total: 4,036 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Gene overview

KnownClusterBlast

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaNMIMCLMO_297 - Region 1 - NRPS

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Location: 1 - 3,373 nt. (total: 3,373 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

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Similar known gene clusters from MIBiG 3.1

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 3373:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

ctg297_1

AMP-binding (20..419): X

nrpys: Leu, Trp

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLTDGGISK
Nearest Stachelhaus code(s):: Leu or Trp DVLTDGGISK (100% 8Å match)
Stachelhaus code match:: 100% (strong)