GCA_958447625.1 - 8 region(s)

Identified primary metabolite regions

c00003_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_3)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	Putrescine2spermidine	Aliphatic_amine	58,535	81,292	Arginine2putrescine R. gnavus	PUTR	40%

c00007_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	OD_fatty_acids	Putative	9,673	34,472

c00013_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_13)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	Rnf_complex	E-MGC	1	18,398	Rnf complex C. sporogenes	RNF	83%

c00017_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	TPP_AA_metabolism	Putative	1	25,440

c00020_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_20)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	Pyruvate2acetate-formate	SCFA	19,108	42,157	Pyruvate to acetate-formate B. thetaiotaomicron	PFL_acetate	100%

c00041_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_41)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	succinate2propionate	SCFA	1	23,756	Succinate to propionate B. theta	PRO	41%

c00052_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_52)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 52.1	porA	SCFA	5,666	18,349	porA C. sporogenes	POR	60%

c00063_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_63)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Fumarate2succinate	SCFA	1	11,809	Fumarate to succinate B. thetaiotaomicron	SUC	66%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_1); c00002_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_2); c00004_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_4); c00005_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_5); c00006_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_6); c00008_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_8); c00009_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_9); c00010_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_10); c00011_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_11); c00012_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_12); c00014_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_14); c00015_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_15); c00016_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_16); c00018_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_18); c00019_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_19); c00021_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_21); c00022_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_22); c00023_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_23); c00024_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_24); c00025_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_25); c00026_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_26); c00027_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_27); c00028_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_28); c00029_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_29); c00030_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_30); c00031_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_31); c00032_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_32); c00033_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_33); c00034_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_34); c00035_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_35); c00036_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_36); c00037_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_37); c00038_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_38); c00039_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_39); c00040_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_40); c00042_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_42); c00043_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_43); c00044_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_44); c00045_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_45); c00046_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_46); c00047_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_47); c00048_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_48); c00049_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_49); c00050_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_50); c00051_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_51); c00053_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_53); c00054_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_54); c00055_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_55); c00056_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_56); c00057_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_57); c00058_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_58); c00059_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_59); c00060_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_60); c00061_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_61); c00062_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_62); c00064_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_64); c00065_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_65); c00066_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_66); c00067_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_67); c00068_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_68); c00069_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_69); c00070_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_70); c00071_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_71); c00072_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_72); c00073_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_73); c00074_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_74); c00075_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_75); c00076_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_76); c00077_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_77); c00078_gnlPro.. (original name was: gnl|Prokka|ELCMOHFK_78)

Compact view

c00003_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 58,535 - 81,292 nt. (total: 22,758 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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c00007_gnlPro.. - Region 1 - OD_fatty_acids

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Location: 9,673 - 34,472 nt. (total: 24,800 nt) Show pHMM detection rules used

OD_fatty_acids: (minimum(1, [PFOR_II, POR, POR_N]) and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

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transport-related genes

regulatory genes

resistance genes

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No matches found.

c00013_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 18,398 nt. (total: 18,398 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00017_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 25,440 nt. (total: 25,440 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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KnownClusterBlast

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No matches found.

c00020_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 19,108 - 42,157 nt. (total: 23,050 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00041_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 23,756 nt. (total: 23,756 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

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resistance genes

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c00052_gnlPro.. - Region 1 - porA

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Location: 5,666 - 18,349 nt. (total: 12,684 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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c00063_gnlPro.. - Region 1 - Fumarate2succinate

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Location: 1 - 11,809 nt. (total: 11,809 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

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