GCA_959018605.1 - 6 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	succinate2propionate,Rnf_complex	E-MGC	1	31,428	Rnf complex C. sporogenes	RNF	100%

c00010_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	Arginine2putrescine,Putrescine2spermidine	Aliphatic_amine	68,084	90,680	Putrescine2spermidine E. rectale	SPRM	100%

c00011_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_11)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Others_HGD_unassigned	Putative	1	14,450

c00017_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_17)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 17.1	Pyruvate2acetate-formate	SCFA	11,383	34,517	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00024_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_24)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 24.1	acetate2butyrate	SCFA	35,863	53,496	Acetate to butyrate C. sporogenes	BUT	83%

c00036_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_36)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 36.1	porA	SCFA	11,989	28,495	Ethanolamine degradation S. typhimurium	EUT	15%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_2); c00003_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_3); c00004_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_4); c00005_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_5); c00006_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_6); c00007_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_7); c00008_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_8); c00009_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_9); c00012_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_12); c00013_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_13); c00014_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_14); c00015_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_15); c00016_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_16); c00018_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_18); c00019_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_19); c00020_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_20); c00021_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_21); c00022_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_22); c00023_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_23); c00025_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_25); c00026_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_26); c00027_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_27); c00028_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_28); c00029_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_29); c00030_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_30); c00031_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_31); c00032_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_32); c00033_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_33); c00034_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_34); c00035_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_35); c00037_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_37); c00038_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_38); c00039_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_39); c00040_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_40); c00041_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_41); c00042_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_42); c00043_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_43); c00044_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_44); c00045_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_45); c00046_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_46); c00047_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_47); c00048_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_48); c00049_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_49); c00050_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_50); c00051_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_51); c00052_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_52); c00053_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_53); c00054_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_54); c00055_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_55); c00056_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_56); c00057_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_57); c00058_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_58); c00059_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_59); c00060_gnlPro.. (original name was: gnl|Prokka|BGKMOBBC_60)

Compact view

c00001_gnlPro.. - Region 1 - Rnf_complex,succinate2propionate

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Location: 1 - 31,428 nt. (total: 31,428 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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core biosynthetic genes

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c00010_gnlPro.. - Region 1 - Arginine2putrescine,Putrescine2spermidine

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Location: 68,084 - 90,680 nt. (total: 22,597 nt) Show pHMM detection rules used

Region on contig edge.

Arginine2putrescine: (minimum(3, [AdoMet_dc, Amidinotransf, Arginase, OKR_DC_1, OKR_DC_1_7_arginine, OTCace]) or ((OKR_DC_1_5_ornithine or OKR_DC_1 or Orn_Arg_deC_N) and minimum(1, [Arginase, OTCace, OTCace_N, PAD_porph])))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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KnownClusterBlast

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c00011_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 14,450 nt. (total: 14,450 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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KnownClusterBlast

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No matches found.

c00017_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 11,383 - 34,517 nt. (total: 23,135 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00024_gnlPro.. - Region 1 - acetate2butyrate

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Location: 35,863 - 53,496 nt. (total: 17,634 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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KnownClusterBlast

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c00036_gnlPro.. - Region 1 - porA

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Location: 11,989 - 28,495 nt. (total: 16,507 nt) Show pHMM detection rules used

Region on contig edge.

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

Legend:

core biosynthetic genes

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Gene details

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KnownClusterBlast

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