Select genomic region:
Overview
9.1
13.1
39.1
43.1
45.1
46.1
55.1
62.1
67.1

### Identified primary metabolite regions

c00009_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_9)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 9.1 | GR_eut-pdu-related | Putative | 4,084 | 40,316 | Propanediol degradation S. enterica | PDU | 37%

c00013_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_13)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 13.1 | succinate2propionate | SCFA | 8,396 | 33,744 | Succinate to propionate B. theta | PRO | 33%

c00039_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_39)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 39.1 | Rnf_complex | E-MGC | 1 | 23,308 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%

c00043_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_43)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 43.1 | Fumarate2succinate | SCFA | 1 | 22,875 |

c00045_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_45)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 45.1 | Putrescine2spermidine | Aliphatic_amine | 1 | 14,821 | Putrescine2spermidine E. rectale | SPRM | 100%

c00046_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_46)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 46.1 | TPP_AA_metabolism | Putative | 1 | 15,740 |

c00055_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_55)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 55.1 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 1 | 19,540 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

c00062_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_62)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 62.1 | Others_HGD_unassigned | Putative | 1 | 15,970 |

c00067_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_67)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 67.1 | Others_HGD_unassigned | Putative | 1 | 14,482 |

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 9.1 | GR_eut-pdu-related | Putative | 4,084 | 40,316 | Propanediol degradation S. enterica | PDU | 37%
Region 13.1 | succinate2propionate | SCFA | 8,396 | 33,744 | Succinate to propionate B. theta | PRO | 33%
Region 39.1 | Rnf_complex | E-MGC | 1 | 23,308 | Acetyl-CoA pathway B. hydrogenotrophica | Acetate | 14%
Region 43.1 | Fumarate2succinate | SCFA | 1 | 22,875 |
Region 45.1 | Putrescine2spermidine | Aliphatic_amine | 1 | 14,821 | Putrescine2spermidine E. rectale | SPRM | 100%
Region 46.1 | TPP_AA_metabolism | Putative | 1 | 15,740 |
Region 55.1 | GR_AA_metabolism,Pyruvate2acetate-formate | SCFA | 1 | 19,540 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 62.1 | Others_HGD_unassigned | Putative | 1 | 15,970 |
Region 67.1 | Others_HGD_unassigned | Putative | 1 | 14,482 |

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_8)
  c00010_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_12)
  c00014_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_15)
  c00016_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_16)
  c00017_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_38)
  c00040_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_42)
  c00044_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_44)
  c00047_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_54)
  c00056_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_61)
  c00063_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_64)
  c00065_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_65)
  c00066_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_66)
  c00068_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_100)
  c00101_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_101)
  c00102_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|KJLEINMB_105)

Compact view
c00009_gnlPro.. - Region 1 - GR_eut-pdu-related
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 4,084 - 40,316 nt. (total: 36,233 nt) Show pHMM detection rules used
GR_eut-pdu-related: (minimum(1, [Gly_430_pcre, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and minimum(2, [Aldedh, EutN_CcmL, EutQ, PTAC, PduV-EutP]) and not (PFL_9_tma or Gly_8-9_TMA or NRDD) and not EutB and not EutC and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00013_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 8,396 - 33,744 nt. (total: 25,349 nt) Show pHMM detection rules used
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00039_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 23,308 nt. (total: 23,308 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00043_gnlPro.. - Region 1 - Fumarate2succinate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 22,875 nt. (total: 22,875 nt) Show pHMM detection rules used
Region on contig edge.
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00045_gnlPro.. - Region 1 - Putrescine2spermidine
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,821 nt. (total: 14,821 nt) Show pHMM detection rules used
Region on contig edge.
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00046_gnlPro.. - Region 1 - TPP_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,740 nt. (total: 15,740 nt) Show pHMM detection rules used
Region on contig edge.
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00055_gnlPro.. - Region 1 - GR_AA_metabolism,Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 19,540 nt. (total: 19,540 nt) Show pHMM detection rules used
Region on contig edge.
GR_AA_metabolism: (minimum(1, [Gly_430_pcre, Gly_8-9_TMA, Gly_radical, Gly_radical_scatole, PFL-like, PFL_6_pcresol, PFL_9_tma, PFL_acetate1, PFL_acetate2, PFL_proline, PFL_toluene]) and not NRDD and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00062_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 15,970 nt. (total: 15,970 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00067_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,482 nt. (total: 14,482 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.