GCA_959598445.1 - 9 region(s)

Identified primary metabolite regions

c00005_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_5)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 5.1	PFOR_II_pathway	SCFA	19,917	43,453	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00007_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_7)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Rnf_complex	E-MGC	3,557	28,568	Rnf complex C. sporogenes	RNF	100%

c00014_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Others_HGD_unassigned	Putative	11,754	33,766

c00076_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_76)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 76.1	Others_HGD_unassigned	Putative	1	15,173

c00082_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_82)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 82.1	Others_HGD_unassigned	Putative	1	13,888

c00089_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_89)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 89.1	Pyruvate2acetate-formate	SCFA	1,356	13,111	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

c00094_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_94)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 94.1	Rnf_complex	E-MGC	1	11,323	Acetyl-CoA pathway B. hydrogenotrophica	Acetate	14%

c00105_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_105)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 105.1	TPP_AA_metabolism	Putative	1	10,061

c00108_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_108)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 108.1	Putrescine2spermidine	Aliphatic_amine	1	9,699	Putrescine2spermidine E. rectale	SPRM	100%

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_1); c00002_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_2); c00003_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_3); c00004_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_4); c00006_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_6); c00008_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_8); c00009_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_9); c00010_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_10); c00011_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_11); c00012_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_12); c00013_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_13); c00015_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_15); c00016_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_16); c00017_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_17); c00018_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_18); c00019_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_19); c00020_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_20); c00021_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_21); c00022_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_22); c00023_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_23); c00024_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_24); c00025_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_25); c00026_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_26); c00027_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_27); c00028_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_28); c00029_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_29); c00030_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_30); c00031_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_31); c00032_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_32); c00033_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_33); c00034_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_34); c00035_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_35); c00036_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_36); c00037_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_37); c00038_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_38); c00039_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_39); c00040_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_40); c00041_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_41); c00042_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_42); c00043_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_43); c00044_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_44); c00045_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_45); c00046_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_46); c00047_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_47); c00048_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_48); c00049_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_49); c00050_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_50); c00051_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_51); c00052_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_52); c00053_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_53); c00054_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_54); c00055_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_55); c00056_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_56); c00057_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_57); c00058_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_58); c00059_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_59); c00060_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_60); c00061_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_61); c00062_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_62); c00063_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_63); c00064_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_64); c00065_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_65); c00066_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_66); c00067_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_67); c00068_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_68); c00069_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_69); c00070_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_70); c00071_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_71); c00072_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_72); c00073_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_73); c00074_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_74); c00075_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_75); c00077_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_77); c00078_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_78); c00079_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_79); c00080_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_80); c00081_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_81); c00083_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_83); c00084_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_84); c00085_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_85); c00086_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_86); c00087_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_87); c00088_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_88); c00090_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_90); c00091_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_91); c00092_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_92); c00093_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_93); c00095_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_95); c00096_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_96); c00097_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_97); c00098_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_98); c00099_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_99); c00100_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_100); c00101_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_101); c00102_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_102); c00103_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_103); c00104_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_104); c00106_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_106); c00107_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_107); c00109_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_109); c00110_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_110); c00111_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_111); c00112_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_112); c00113_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_113); c00114_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_114); c00115_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_115); c00116_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_116); c00117_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_117); c00118_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_118); c00119_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_119); c00120_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_120); c00121_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_121); c00122_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_122); c00123_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_123); c00124_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_124); c00125_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_125); c00126_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_126); c00127_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_127); c00128_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_128); c00129_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_129); c00130_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_130); c00131_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_131); c00132_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_132); c00133_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_133); c00134_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_134); c00135_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_135); c00136_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_136); c00137_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_137); c00138_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_138); c00139_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_139); c00140_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_140); c00141_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_141); c00142_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_142); c00143_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_143); c00144_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_144); c00145_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_145); c00146_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_146); c00147_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_147); c00148_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_148); c00149_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_149); c00150_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_150); c00151_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_151); c00152_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_152); c00153_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_153); c00154_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_154); c00155_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_155); c00156_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_156); c00157_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_157); c00158_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_158); c00159_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_159); c00160_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_160); c00161_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_161); c00162_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_162); c00163_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_163); c00164_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_164); c00165_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_165); c00166_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_166); c00167_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_167); c00168_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_168); c00169_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_169); c00170_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_170); c00171_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_171); c00172_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_172); c00173_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_173); c00174_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_174); c00175_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_175); c00176_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_176); c00177_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_177); c00178_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_178); c00179_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_179); c00180_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_180); c00181_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_181); c00182_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_182); c00183_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_183); c00184_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_184); c00185_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_185); c00186_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_186); c00187_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_187); c00188_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_188); c00189_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_189); c00190_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_190); c00191_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_191); c00192_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_192); c00193_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_193); c00194_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_194); c00195_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_195); c00196_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_196); c00197_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_197); c00198_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_198); c00199_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_199); c00200_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_200); c00201_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_201); c00202_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_202); c00203_gnlPro.. (original name was: gnl|Prokka|KIIOHMHI_203)

Compact view

c00005_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 19,917 - 43,453 nt. (total: 23,537 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00007_gnlPro.. - Region 1 - Rnf_complex

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Location: 3,557 - 28,568 nt. (total: 25,012 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00014_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 11,754 - 33,766 nt. (total: 22,013 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00076_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 15,173 nt. (total: 15,173 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00082_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 13,888 nt. (total: 13,888 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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core biosynthetic genes

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transport-related genes

regulatory genes

resistance genes

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c00089_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 1,356 - 13,111 nt. (total: 11,756 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00094_gnlPro.. - Region 1 - Rnf_complex

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Location: 1 - 11,323 nt. (total: 11,323 nt) Show pHMM detection rules used

Region on contig edge.

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00105_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 10,061 nt. (total: 10,061 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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core biosynthetic genes

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c00108_gnlPro.. - Region 1 - Putrescine2spermidine

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Location: 1 - 9,699 nt. (total: 9,699 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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resistance genes

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