GCA_959601885.1 - 8 region(s)

Identified primary metabolite regions

c00001_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	160,219	183,213	Pyruvate to acetate and formate C. acetobutylicum	PFL_acetate	100%

c00004_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	Rnf_complex	E-MGC	191	27,373	Rnf complex C. sporogenes	RNF	100%

c00014_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_14)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Others_HGD_unassigned	Putative	16,421	40,677
Region 14.2	Putrescine2spermidine	Aliphatic_amine	89,016	112,457	Putrescine2spermidine E. rectale	SPRM	100%

c00015_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_15)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 15.1	porA	SCFA	9,290	32,759

c00018_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_18)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	acetate2butyrate	SCFA	1	16,566	Acetate to butyrate C. sporogenes	BUT	83%

c00027_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_27)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	gallic_acid_met	Aromatic	29,460	41,922	Gallic acid degradation B. sp. KLE	GALL	100%

c00032_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_32)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 32.1	succinate2propionate	SCFA	1	17,235	Succinate to propionate B. theta	PRO	33%

No primary metabolite regions were found in these records:: c00002_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_2); c00003_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_3); c00005_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_5); c00006_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_6); c00007_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_7); c00008_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_8); c00009_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_9); c00010_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_10); c00011_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_11); c00012_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_12); c00013_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_13); c00016_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_16); c00017_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_17); c00019_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_19); c00020_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_20); c00021_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_21); c00022_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_22); c00023_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_23); c00024_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_24); c00025_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_25); c00026_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_26); c00028_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_28); c00029_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_29); c00030_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_30); c00031_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_31); c00033_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_33); c00034_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_34); c00035_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_35); c00036_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_36); c00037_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_37); c00038_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_38); c00039_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_39); c00040_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_40); c00041_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_41); c00042_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_42); c00043_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_43); c00044_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_44); c00045_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_45); c00046_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_46); c00047_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_47); c00048_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_48); c00049_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_49); c00050_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_50); c00051_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_51); c00052_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_52); c00053_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_53); c00054_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_54); c00055_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_55); c00056_gnlPro.. (original name was: gnl|Prokka|ILAEBMNB_56)

Compact view

c00001_gnlPro.. - Region 1 - Pyruvate2acetate-formate

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Location: 160,219 - 183,213 nt. (total: 22,995 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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c00004_gnlPro.. - Region 1 - Rnf_complex

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Location: 191 - 27,373 nt. (total: 27,183 nt) Show pHMM detection rules used

Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

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c00014_gnlPro.. - Region 1 - Others_HGD_unassigned

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Location: 16,421 - 40,677 nt. (total: 24,257 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

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No matches found.

c00014_gnlPro.. - Region 2 - Putrescine2spermidine

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Location: 89,016 - 112,457 nt. (total: 23,442 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00015_gnlPro.. - Region 1 - porA

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Location: 9,290 - 32,759 nt. (total: 23,470 nt) Show pHMM detection rules used

porA: (Fer4_7 and TPP_enzyme_C and POR and POR_N and PFOR_II and not (EKR or Fer4_16))

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c00018_gnlPro.. - Region 1 - acetate2butyrate

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Location: 1 - 16,566 nt. (total: 16,566 nt) Show pHMM detection rules used

Region on contig edge.

acetate2butyrate: (not (POR or POR_N or PFOR_II) and minimum(4, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, ECH_2, ETF, ETF_alpha, HCDH_N, Thiolase_N, ketoacyl-synt]) and HCDH and minimum(1, [EC1_2-faecali, ECH1_Enoyl_CoA_DH1, ECH1_Enoyl_CoA_DH2, ECH1_Enoyl_CoA_DH3, ECH1_Enoyl_CoA_DH4, Thiolase_C]))

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c00027_gnlPro.. - Region 1 - gallic_acid_met

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Location: 29,460 - 41,922 nt. (total: 12,463 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

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c00032_gnlPro.. - Region 1 - succinate2propionate

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Location: 1 - 17,235 nt. (total: 17,235 nt) Show pHMM detection rules used

Region on contig edge.

succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

Legend:

core biosynthetic genes

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regulatory genes

resistance genes

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