GCA_959606025.1 - 2 region(s)

Identified primary metabolite regions

c00004_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_4)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	PFOR_II_pathway	SCFA	924	24,481	PFOR II pathway B. thetaiotaomicron	PFORII	100%

c00010_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_10)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 10.1	TPP_AA_metabolism	Putative	41,589	67,615

No primary metabolite regions were found in these records:: c00001_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_1); c00002_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_2); c00003_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_3); c00005_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_5); c00006_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_6); c00007_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_7); c00008_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_8); c00009_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_9); c00011_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_11); c00012_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_12); c00013_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_13); c00014_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_14); c00015_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_15); c00016_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_16); c00017_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_17); c00018_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_18); c00019_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_19); c00020_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_20); c00021_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_21); c00022_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_22); c00023_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_23); c00024_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_24); c00025_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_25); c00026_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_26); c00027_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_27); c00028_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_28); c00029_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_29); c00030_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_30); c00031_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_31); c00032_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_32); c00033_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_33); c00034_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_34); c00035_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_35); c00036_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_36); c00037_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_37); c00038_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_38); c00039_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_39); c00040_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_40); c00041_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_41); c00042_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_42); c00043_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_43); c00044_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_44); c00045_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_45); c00046_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_46); c00047_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_47); c00048_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_48); c00049_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_49); c00050_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_50); c00051_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_51); c00052_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_52); c00053_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_53); c00054_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_54); c00055_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_55); c00056_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_56); c00057_gnlPro.. (original name was: gnl|Prokka|LBLDJOKF_57)

Compact view

c00004_gnlPro.. - Region 1 - PFOR_II_pathway

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Location: 924 - 24,481 nt. (total: 23,558 nt) Show pHMM detection rules used

PFOR_II_pathway: cds(POR and POR_N and PFOR_II and EKR and Fer4_16 and TPP_enzyme_C)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00010_gnlPro.. - Region 1 - TPP_AA_metabolism

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Location: 41,589 - 67,615 nt. (total: 26,027 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

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