Select genomic region:
Overview
16.1
65.1
66.1
101.1
117.1
123.1

### Identified primary metabolite regions

c00016_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_16)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | OD_AA_metabolism | Putative | 11,764 | 35,080 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%

c00065_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_65)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 65.1 | Others_HGD_unassigned | Putative | 1 | 14,258 |

c00066_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_66)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 66.1 | pdu | SCFA-other | 1 | 14,210 | Propanediol degradation S. enterica | PDU | 37%

c00101_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_101)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 101.1 | Pyruvate2acetate-formate | SCFA | 1 | 8,213 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%

c00117_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_117)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 117.1 | succinate2propionate | SCFA | 1 | 6,565 | Succinate to propionate B. theta | PRO | 25%

c00123_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_123)

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 123.1 | Rnf_complex | E-MGC | 1 | 6,076 | Rnf complex C. sporogenes | RNF | 50%

Region | Type | Class | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | --- | ---
Region 16.1 | OD_AA_metabolism | Putative | 11,764 | 35,080 | PFOR II pathway B. thetaiotaomicron | PFORII | 100%
Region 65.1 | Others_HGD_unassigned | Putative | 1 | 14,258 |
Region 66.1 | pdu | SCFA-other | 1 | 14,210 | Propanediol degradation S. enterica | PDU | 37%
Region 101.1 | Pyruvate2acetate-formate | SCFA | 1 | 8,213 | Pyruvate to acetate-formate E. coli | PFL_acetate | 100%
Region 117.1 | succinate2propionate | SCFA | 1 | 6,565 | Succinate to propionate B. theta | PRO | 25%
Region 123.1 | Rnf_complex | E-MGC | 1 | 6,076 | Rnf complex C. sporogenes | RNF | 50%

No primary metabolite regions were found in these records:
  c00001_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_1)
  c00002_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_2)
  c00003_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_3)
  c00004_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_4)
  c00005_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_5)
  c00006_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_6)
  c00007_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_7)
  c00008_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_8)
  c00009_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_9)
  c00010_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_10)
  c00011_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_11)
  c00012_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_12)
  c00013_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_13)
  c00014_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_14)
  c00015_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_15)
  c00017_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_17)
  c00018_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_18)
  c00019_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_19)
  c00020_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_20)
  c00021_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_21)
  c00022_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_22)
  c00023_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_23)
  c00024_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_24)
  c00025_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_25)
  c00026_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_26)
  c00027_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_27)
  c00028_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_28)
  c00029_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_29)
  c00030_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_30)
  c00031_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_31)
  c00032_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_32)
  c00033_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_33)
  c00034_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_34)
  c00035_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_35)
  c00036_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_36)
  c00037_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_37)
  c00038_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_38)
  c00039_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_39)
  c00040_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_40)
  c00041_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_41)
  c00042_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_42)
  c00043_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_43)
  c00044_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_44)
  c00045_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_45)
  c00046_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_46)
  c00047_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_47)
  c00048_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_48)
  c00049_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_49)
  c00050_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_50)
  c00051_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_51)
  c00052_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_52)
  c00053_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_53)
  c00054_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_54)
  c00055_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_55)
  c00056_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_56)
  c00057_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_57)
  c00058_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_58)
  c00059_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_59)
  c00060_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_60)
  c00061_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_61)
  c00062_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_62)
  c00063_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_63)
  c00064_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_64)
  c00067_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_67)
  c00068_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_68)
  c00069_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_69)
  c00070_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_70)
  c00071_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_71)
  c00072_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_72)
  c00073_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_73)
  c00074_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_74)
  c00075_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_75)
  c00076_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_76)
  c00077_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_77)
  c00078_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_78)
  c00079_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_79)
  c00080_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_80)
  c00081_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_81)
  c00082_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_82)
  c00083_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_83)
  c00084_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_84)
  c00085_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_85)
  c00086_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_86)
  c00087_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_87)
  c00088_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_88)
  c00089_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_89)
  c00090_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_90)
  c00091_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_91)
  c00092_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_92)
  c00093_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_93)
  c00094_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_94)
  c00095_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_95)
  c00096_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_96)
  c00097_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_97)
  c00098_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_98)
  c00099_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_99)
  c00100_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_100)
  c00102_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_102)
  c00103_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_103)
  c00104_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_104)
  c00105_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_105)
  c00106_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_106)
  c00107_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_107)
  c00108_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_108)
  c00109_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_109)
  c00110_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_110)
  c00111_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_111)
  c00112_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_112)
  c00113_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_113)
  c00114_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_114)
  c00115_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_115)
  c00116_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_116)
  c00118_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_118)
  c00119_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_119)
  c00120_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_120)
  c00121_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_121)
  c00122_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_122)
  c00124_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_124)
  c00125_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_125)
  c00126_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_126)
  c00127_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_127)
  c00128_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_128)
  c00129_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_129)
  c00130_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_130)
  c00131_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_131)
  c00132_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_132)
  c00133_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_133)
  c00134_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_134)
  c00135_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_135)
  c00136_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_136)
  c00137_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_137)
  c00138_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_138)
  c00139_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_139)
  c00140_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_140)
  c00141_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_141)
  c00142_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_142)
  c00143_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_143)
  c00144_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_144)
  c00145_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_145)
  c00146_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_146)
  c00147_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_147)
  c00148_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_148)
  c00149_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_149)
  c00150_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_150)
  c00151_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_151)
  c00152_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_152)
  c00153_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_153)
  c00154_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_154)
  c00155_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_155)
  c00156_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_156)
  c00157_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_157)
  c00158_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_158)
  c00159_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_159)
  c00160_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_160)
  c00161_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_161)
  c00162_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_162)
  c00163_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_163)
  c00164_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_164)
  c00165_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_165)
  c00166_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_166)
  c00167_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_167)
  c00168_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_168)
  c00169_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_169)
  c00170_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_170)
  c00171_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_171)
  c00172_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_172)
  c00173_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_173)
  c00174_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_174)
  c00175_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_175)
  c00176_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_176)
  c00177_gnlPro.. (original name was: gnl|Prokka|BNAIKFLL_177)

Compact view
c00016_gnlPro.. - Region 1 - OD_AA_metabolism
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 11,764 - 35,080 nt. (total: 23,317 nt) Show pHMM detection rules used
Region on contig edge.
OD_AA_metabolism: (minimum(1, [PFOR_II, POR, POR_N]) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (Gly_radical_scatole or Gly_radical or Gly_430_pcre or Gly_8-9_TMA))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00065_gnlPro.. - Region 1 - Others_HGD_unassigned
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,258 nt. (total: 14,258 nt) Show pHMM detection rules used
Region on contig edge.
Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.

No matches found.

c00066_gnlPro.. - Region 1 - pdu
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 14,210 nt. (total: 14,210 nt) Show pHMM detection rules used
Region on contig edge.
pdu: (minimum(2, [Aldedh, BMC, Cob_adeno_trans, EutN_CcmL, Fe-ADH, Fe-ADH_2, PDU_like, PTAC, PduV-EutP]) and Dehydratase_MU and Dehydratase_SU and Dehydratase_LU)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00101_gnlPro.. - Region 1 - Pyruvate2acetate-formate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 8,213 nt. (total: 8,213 nt) Show pHMM detection rules used
Region on contig edge.
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
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Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00117_gnlPro.. - Region 1 - succinate2propionate
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 6,565 nt. (total: 6,565 nt) Show pHMM detection rules used
Region on contig edge.
succinate2propionate: (minimum(4, [AcetylCoA_hyd_C, AcetylCoA_hydro, B12-binding, Biotin_lipoyl, Glyoxalase_4, HMGL-like, MM_CoA_mutase, MeaB, OAD_beta, OAD_gamma, PYC_OADA]) and minimum(1, [CT_Btheta, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, CT_Vparvula]) and not Cytidylate_kin)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
c00123_gnlPro.. - Region 1 - Rnf_complex
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Download region GenBank file
Location: 1 - 6,076 nt. (total: 6,076 nt) Show pHMM detection rules used
Region on contig edge.
Rnf_complex: (Complex1_51K and minimum(5, [FMN_bind, FeS, Fer4, Fer4_9, NQR2_RnfD_RnfE, Rnf-Nqr, RnfC_N, SLBB]))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
encapsulation genes
electron transport genes
other genes
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the gutSMASH KnownClusterBlast database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.