Genome ID：GCA_000011825.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
0	37	29	47.01

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
No hit found

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
No hit found

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PNEMOBHH_1	1048065	1048855	cshA	0.0	Cell surface hydrophobicity proteins	Adherence	100.00	100.00	-
PNEMOBHH_1	1305589	1306440	rfbD	0.0	Capsule	Immune modulation	100.00	100.00	WP_014621820
PNEMOBHH_1	963149	963907	STU_RS14545	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226028
PNEMOBHH_1	963894	965012	STU_RS14550	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226029
PNEMOBHH_1	965123	965746	STU_RS14555	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226030
PNEMOBHH_1	965887	967062	STU_RS14560	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226032
PNEMOBHH_1	967069	968469	STU_RS14565	0.0	Capsule	Immune modulation	100.00	100.00	WP_179970486
PNEMOBHH_1	968965	969957	STU_RS14570	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226034
PNEMOBHH_1	969982	970707	STU_RS14575	0.0	Capsule	Immune modulation	100.00	100.00	WP_041828375
PNEMOBHH_1	971804	972445	STU_RS14590	0.0	Capsule	Immune modulation	100.00	100.00	WP_041828240
PNEMOBHH_1	974456	974935	STU_RS14610	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226040
PNEMOBHH_1	975038	975523	STU_RS14615	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226041
PNEMOBHH_1	975523	975972	STU_RS14620	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226042
PNEMOBHH_1	975981	976977	STU_RS14625*	0.0	Capsule	Immune modulation	100.00	100.00	-
PNEMOBHH_1	977206	978573	STU_RS14630	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226045
PNEMOBHH_1	978630	979370	STU_RS14635	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226046
PNEMOBHH_1	979380	980072	STU_RS14640	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226047
PNEMOBHH_1	980081	980812	STU_RS14645	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226048
PNEMOBHH_1	980813	982267	STU_RS14650	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226049
PNEMOBHH_1	1092884	1093477	STU_RS15260	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226149
PNEMOBHH_1	1295138	1296922	STU_RS16230	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226325
PNEMOBHH_1	1296919	1297974	STU_RS16235	0.0	Capsule	Immune modulation	100.00	100.00	WP_002948022
PNEMOBHH_1	1297994	1299199	STU_RS16240	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226326
PNEMOBHH_1	1299199	1300008	STU_RS16245	0.0	Capsule	Immune modulation	100.00	100.00	WP_002948020
PNEMOBHH_1	1299992	1300948	STU_RS16250	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226328
PNEMOBHH_1	1300945	1302093	STU_RS16255	0.0	Capsule	Immune modulation	100.00	100.00	WP_041828290
PNEMOBHH_1	1302202	1303212	STU_RS16260	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226330
PNEMOBHH_1	1303212	1304486	STU_RS16265	0.0	Capsule	Immune modulation	100.00	100.00	WP_011226331
PNEMOBHH_1	857068	858726	fbp54	0.0	FBPs	Adherence	99.94	100.00	WP_011227179
PNEMOBHH_1	1128243	1129004	srtA	0.0	Sortase A	Exoenzyme	99.87	100.00	-
PNEMOBHH_1	1092884	1093477	STR_RS05880	0.0	Capsule	Immune modulation	99.83	100.00	WP_011226149
PNEMOBHH_1	1092884	1093477	STER_RS06030	0.0	Capsule	Immune modulation	99.66	100.00	WP_011226149
PNEMOBHH_1	43821	44660	cbpD	0.0	Autolysin	Exoenzyme	99.64	100.00	WP_011226733
PNEMOBHH_1	1093477	1094346	rfbA	0.0	Capsule	Immune modulation	99.54	100.00	WP_011681286
PNEMOBHH_1	979380	980072	STR_RS05255	0.0	Capsule	Immune modulation	99.42	100.00	WP_011227247
PNEMOBHH_1	980081	980812	STR_RS05260	0.0	Capsule	Immune modulation	98.77	100.00	WP_011227248
PNEMOBHH_1	978630	979370	STER_RS05305	0.0	Capsule	Immune modulation	98.25	100.00	WP_011681174
PNEMOBHH_1	980081	980812	STER_RS05315	0.0	Capsule	Immune modulation	98.09	100.00	WP_011681176
PNEMOBHH_1	978635	979370	STR_RS05250	0.0	Capsule	Immune modulation	97.96	98.13	WP_011227246
PNEMOBHH_1	980813	982267	STR_RS05265	0.0	Capsule	Immune modulation	97.94	100.00	WP_041827043
PNEMOBHH_1	980813	982267	STER_RS05320	0.0	Capsule	Immune modulation	97.47	99.79	WP_011681177
PNEMOBHH_1	977210	978573	STER_RS05300	0.0	Capsule	Immune modulation	94.94	99.71	WP_011681173
PNEMOBHH_1	979380	980072	STER_RS05310	0.0	Capsule	Immune modulation	89.90	100.00	WP_011681175
PNEMOBHH_1	600778	602081	eno	0.0	Streptococcal enolase	Exoenzyme	88.09	99.54	WP_000022832
PNEMOBHH_1	1592201	1593211	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	86.92	99.51	WP_002986042
PNEMOBHH_1	1091408	1092454	rfbB	0.0	Capsule	Immune modulation	80.71	100.00	WP_009659423
PNEMOBHH_1	149218	150501	tig/ropA	0.0	Trigger factor	Stress survival	80.58	99.77	WP_000107753
PNEMOBHH_1	970775	971113	STU_RS19955	1.31e-175	Capsule	Immune modulation	100.00	100.00	WP_148148905

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PNEMOBHH_1	1131691	1132674	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	94.82	100.00	AAK75326
PNEMOBHH_1	710268	711341	MntE	0.0	manganese homeostasis	94.41	99.72	ABF32167
PNEMOBHH_1	1469630	1471933	pfl2(Sp_0459)	0.0	formate acetyltransferase	92.97	99.22	AAK74619
PNEMOBHH_1	518542	519510	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
PNEMOBHH_1	730791	733037	metE	0.0	methionine biosynthesis enzymes	91.99	100.00	AAK74738
PNEMOBHH_1	1210446	1211927	SPD_0310	0.0	UPF0371 protein SPD_0310	91.90	100.00	ABJ54480
PNEMOBHH_1	64696	65688	recA	0.0	DNA recombination and repair	91.24	85.31	AAL00560
PNEMOBHH_1	27337	28308	prsA2	0.0	ribose-phosphate pyrophosphokinase	90.12	100.00	ABF36968
PNEMOBHH_1	1355889	1354738	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.06	99.74	AAL00050
PNEMOBHH_1	1321422	1319440	uvrB	0.0	excinuclease ABC, B subunit	88.96	99.70	AE014259_2
PNEMOBHH_1	1115497	1113767	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	87.87	100.00	AAK34199
PNEMOBHH_1	1784707	1783229	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.22	100.00	ADE32434
PNEMOBHH_1	600778	602079	Eno	0.0	enolase	86.21	99.77	ABP90468
PNEMOBHH_1	1769971	1768079	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.89	98.90	ABP91129
PNEMOBHH_1	735962	734253	PGM	0.0	phosphoglucomutase	83.89	99.65	ACH87041
PNEMOBHH_1	1635147	1636157	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
PNEMOBHH_1	884295	882934	mnmE	0.0	central tRNA-modifying GTPase	82.02	99.56	ABP90420
PNEMOBHH_1	1687164	1685272	PepO	0.0	endopeptidase	80.03	100.00	ABF32980
PNEMOBHH_1	586348	587238	bglB	1.29e-178	putative phospho--glucosidase	88.89	99.66	AAK33487
PNEMOBHH_1	795360	794425	SP_0676	7.16e-168	transcription facot	81.73	96.89	AAK74821
PNEMOBHH_1	733229	734086	metF	8.38e-165	methionine biosynthesis enzymes	86.36	99.31	AAK74739
PNEMOBHH_1	1020391	1019687	covR	6.56e-131	responder protein	85.53	100.00	AAK71319
PNEMOBHH_1	1184876	1184205	rr01	1.16e-125	response regulator	84.38	99.56	CAB54566
PNEMOBHH_1	1020391	1019687	walR	3.10e-121	DNA-binding response regulator	81.70	100.00	ANC99504
PNEMOBHH_1	308104	308790	CovR	9.76e-118	serves to repress GAS virulence factor-encoding genes	80.79	100.00	ACE75886
PNEMOBHH_1	739916	740584	CiaR	6.89e-117	two-component response regulator	83.86	99.55	AAK74935
PNEMOBHH_1	739916	740587	ciaR	6.85e-115	two component system response regulator	81.70	99.12	AIK75708
PNEMOBHH_1	65985	66380	SpxA2	3.59e-74	transcriptional regulator	90.91	100.00	ERL21461
PNEMOBHH_1	895652	896053	SpxA1	3.65e-66	transcriptional regulator	80.60	100.00	ERL19273
PNEMOBHH_1	150659	151159	RopE (M5005_Spy_1611)	9.58e-75	probable DNA-directed RNA polymerase subunit delta	80.84	87.43	AAK34603
PNEMOBHH_1	1469630	1471927	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	82.94	98.08	MYN69560
PNEMOBHH_1	1672703	1671684	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	96.18	100.00	ABJ55451