Genome ID:GCA_000215465.2
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709754 | 711331 | vgaD | ARO:3002832 | vgaD | 99.81 | 100.00 | GQ205627.1 |
| CJLMHLDA_4 | 709038 | 709688 | vatH | ARO:3002845 | vatH | 99.54 | 100.00 | GQ205627.2 |
| CJLMHLDA_4 | 505058 | 505552 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709754 | 711331 | vga(D) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.87 | 100.00 | GQ205627 |
| CJLMHLDA_4 | 709038 | 709688 | vat(H) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.85 | 100.00 | GQ205627 |
| CJLMHLDA_4 | 505058 | 505552 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709757 | 711331 | vga(D) | ABC-F type ribosomal protection protein Vga(D) | BLASTX | 99.81 | 100.00 | WP_063856938.1 |
| CJLMHLDA_4 | 709041 | 709688 | vat(H) | streptogramin A O-acetyltransferase Vat(H) | BLASTX | 99.54 | 100.00 | WP_063856935.1 |
| CJLMHLDA_4 | 505058 | 505549 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 847081 | 847788 | WalR | 5.83e-115 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |