Genome ID:GCA_000218345.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMHGJOML_1 | 1655844 | 1656746 | cepA | ARO:3003559 | cepA | 99.00 | 100.00 | U05883.1 |
| NMHGJOML_2 | 957563 | 958363 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| NMHGJOML_2 | 951061 | 952986 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NMHGJOML_2 | 957563 | 958363 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| NMHGJOML_1 | 1655844 | 1656746 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | U05887 |
| NMHGJOML_2 | 951061 | 952986 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
| NMHGJOML_1 | 1741380 | 1742330 | cfxA3 | Ampicillin | 86.12 | 98.34 | AF472622 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMHGJOML_2 | 957566 | 958363 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| NMHGJOML_1 | 1655847 | 1656746 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
| NMHGJOML_2 | 951064 | 952986 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| NMHGJOML_1 | 1741378 | 1742331 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | BLASTX | 83.65 | 99.07 | WP_004348227.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NMHGJOML_4 | 413390 | 411855 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.08 | 93.94 | BAA04222 |