Genome ID:GCA_000260335.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGLPIMID_3 | 26293 | 27069 | ErmC | ARO:3000250 | ErmC | 95.04 | 105.74 | M12730.1 |
| OGLPIMID_3 | 7369 | 9288 | tet(M) | ARO:3000186 | tet(M) | 98.90 | 100.00 | AB039845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGLPIMID_3 | 5798 | 7175 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.56 | 100.00 | AY081910 |
| OGLPIMID_3 | 7369 | 9288 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.53 | 100.00 | X75073 |
| OGLPIMID_3 | 26336 | 27069 | erm(C) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.05 | 99.86 | Y09003 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGLPIMID_3 | 7372 | 9288 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| OGLPIMID_3 | 5868 | 7175 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.85 | 95.20 | WP_002294500.1 |
| OGLPIMID_3 | 26341 | 27066 | erm(C) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) | BLASTX | 98.35 | 99.18 | WP_032492416.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OGLPIMID_9 | 60695 | 61402 | WalR | 3.20e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| OGLPIMID_8 | 518265 | 518462 | CspR | 1.52e-27 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| OGLPIMID_8 | 518265 | 518459 | CspA | 7.41e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |