Genome ID：GCA_000523045.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
17	10	4	20.12

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LIADFHIH_1	3350082	3350843	ANT(4')-Ia	ARO:3002623	ANT(4')-Ia	99.60	100.00	K02551.1
LIADFHIH_1	2567473	2568327	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
LIADFHIH_1	2548764	2549966	blt	ARO:3003006	blt	100.00	100.00	L32599.1
LIADFHIH_1	2326451	2327620	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
LIADFHIH_1	1358198	1359058	TEM-1	ARO:3000873	TEM-1	100.00	100.00	AL513383.1
LIADFHIH_1	1356130	1357506	tet(L)	ARO:3000179	tet(L)	99.78	100.00	M11036.1
LIADFHIH_1	1354794	1355984	tet(C)	ARO:3000167	tet(C)	100.00	100.00	AY043299.1
LIADFHIH_1	1352093	1352410	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
LIADFHIH_1	1351755	1352093	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
LIADFHIH_1	892013	894583	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
LIADFHIH_1	583970	585613	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
LIADFHIH_1	339153	339746	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
LIADFHIH_1	288650	290083	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
LIADFHIH_1	275835	276755	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LIADFHIH_1	3350082	3350843	aadD	Amikacin, Tobramycin	100.00	100.00	M19465
LIADFHIH_1	2567473	2568327	aadK	Streptomycin	100.00	100.00	M26879
LIADFHIH_1	1358198	1359058	blaTEM-1A	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	100.00	100.00	HM749966
LIADFHIH_1	275835	276755	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
LIADFHIH_1	1356130	1357506	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	100.00	100.00	M29725
LIADFHIH_1	1354794	1355984	tet(C)	Doxycycline, Tetracycline	99.92	100.00	AF055345

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LIADFHIH_1	3350073	3350840	aadD1	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	EXACTX	100.00	100.00	WP_001795128.1
LIADFHIH_1	2567476	2568327	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
LIADFHIH_1	1358198	1359055	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	ALLELEX	100.00	100.00	WP_000027057.1
LIADFHIH_1	275835	276752	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
LIADFHIH_1	4012599	4013117	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
LIADFHIH_1	1354797	1355984	tet(C)	tetracycline efflux MFS transporter Tet(C)	EXACTX	100.00	100.00	WP_001297013.1
LIADFHIH_1	1356133	1357506	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_001574277.1
LIADFHIH_1	4015120	4016493	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
LIADFHIH_1	583973	585613	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
LIADFHIH_1	2017529	2020123	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LIADFHIH_1	3525374	3526516	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
LIADFHIH_1	3526999	3528180	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
LIADFHIH_1	3526535	3526984	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
LIADFHIH_1	1970871	1972634	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
LIADFHIH_1	3123808	3124593	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
LIADFHIH_1	3119972	3120910	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
LIADFHIH_1	3122586	3123782	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
LIADFHIH_1	3120938	3122557	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
LIADFHIH_1	2127094	2127735	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062
LIADFHIH_1	3112816	3119952	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.97	100.00	NP_391076

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LIADFHIH_1	132881	134017	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
LIADFHIH_1	19073	19942	pdxS	3.00e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
LIADFHIH_1	1671720	1672496	CodY	3.28e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
LIADFHIH_1	3373761	3374330	ClpP	2.43e-98	part of proteolytic complex	81.05	97.44	BAB94595