Genome ID：GCA_000691185.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	9	18.71

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PNEKKDIO_5	124823	127393	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
PNEKKDIO_4	94864	95784	mphK	ARO:3004541	mphK	98.04	100.00	CP010314.1
PNEKKDIO_4	81530	82969	lmrB	ARO:3002813	lmrB	99.16	100.42	JYFL01000006.1
PNEKKDIO_4	31847	32440	tmrB	ARO:3003059	tmrB	97.97	100.00	AL009126.3
PNEKKDIO_38	31064	32233	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
PNEKKDIO_9	30948	32591	vmlR	ARO:3004476	vmlR	98.17	100.00	NC_000964.3
PNEKKDIO_45	12655	12972	ykkD	ARO:3003064	ykkD	98.10	100.00	AL009126.1
PNEKKDIO_45	12317	12655	ykkC	ARO:3003063	ykkC	98.21	100.00	AL009126.1
PNEKKDIO_55	11585	12439	aadK	ARO:3002627	aadK	98.59	100.00	AL009126.1
PNEKKDIO_63	6221	7423	blt	ARO:3003006	blt	100.00	100.00	L32599.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PNEKKDIO_55	11587	12439	aadK	Streptomycin	98.71	99.77	M26879
PNEKKDIO_24	36536	37912	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	98.47	100.00	D12567
PNEKKDIO_4	94864	95784	mph(K)	Spiramycin, Telithromycin	97.94	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PNEKKDIO_55	11588	12439	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	98.59	100.00	WP_003229862.1
PNEKKDIO_24	36536	37909	tet(L)	tetracycline efflux MFS transporter Tet(L)	BLASTX	98.25	100.00	WP_063856081.1
PNEKKDIO_9	30948	32588	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.17	100.00	WP_003234144.1
PNEKKDIO_4	94867	95784	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.04	100.00	WP_003246254.1
PNEKKDIO_24	39920	40438	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.75	100.00	WP_003242546.1
PNEKKDIO_16	40883	43480	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.94	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PNEKKDIO_15	77174	78793	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	99.81	100.00	NP_391078
PNEKKDIO_15	78821	79759	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.79	100.00	NP_391077
PNEKKDIO_20	64789	65970	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
PNEKKDIO_34	14047	14688	hlyIII	0.0	Hemolysin III	Exotoxin	99.53	100.00	NP_390062
PNEKKDIO_15	75138	75923	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.49	100.00	NP_391080
PNEKKDIO_15	79779	86915	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.27	100.00	NP_391076
PNEKKDIO_17	78504	80267	dep/capD	0.0	Capsule	Immune modulation	99.26	100.00	NP_389723
PNEKKDIO_20	63164	64306	capA	0.0	Capsule	Immune modulation	99.21	100.00	NP_391469
PNEKKDIO_20	64325	64774	capC	0.0	Capsule	Immune modulation	99.11	100.00	NP_391470
PNEKKDIO_15	75949	77145	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.00	100.00	NP_391079

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PNEKKDIO_36	8385	9521	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
PNEKKDIO_57	4548	5417	pdxS	9.99e-152	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PNEKKDIO_6	95385	96161	CodY	1.13e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PNEKKDIO_8	106132	106701	ClpP	8.12e-100	part of proteolytic complex	81.05	97.44	BAB94595
PNEKKDIO_10	29081	28689	spxA1	7.84e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
PNEKKDIO_10	29081	28689	spx	4.67e-69	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PNEKKDIO_30	35186	34944	SpoVG	7.00e-39	RNA-binding protein	81.48	79.41	AAT02994
PNEKKDIO_9	85587	85390	CspA	5.41e-32	cold shock protein	90.91	100.00	CAA62903
PNEKKDIO_34	2084	1890	CspD	2.33e-29	cold shock protein	81.54	98.48	CAC99957
PNEKKDIO_3	23206	23012	CspB	1.58e-27	cold shock protein	83.08	98.48	CAD00094