Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29390 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29376 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.64 | 98.67 | KR610408 |
| ELOIDCJJ_2 | 128470 | 129846 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29384 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| ELOIDCJJ_2 | 128476 | 129846 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_11 | 74943 | 76124 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_21 | 34818 | 35954 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| ELOIDCJJ_35 | 19034 | 19903 | pdxS | 1.77e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| ELOIDCJJ_1 | 386621 | 387397 | CodY | 5.09e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| ELOIDCJJ_31 | 10378 | 10770 | spxA1 | 9.94e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| ELOIDCJJ_27 | 49885 | 50082 | CspA | 2.94e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| ELOIDCJJ_4 | 21199 | 21393 | CspD | 3.98e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| ELOIDCJJ_4 | 21199 | 21396 | CspB | 8.24e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| ELOIDCJJ_27 | 49885 | 50079 | CspR | 3.85e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| ELOIDCJJ_12 | 47760 | 46888 | lipA (SAUSA300_0829) | 3.01e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |