Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 7 | 7.87 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MLHCIMPN_17 | 172895 | 173944 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MLHCIMPN_17 | 172895 | 173930 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
| MLHCIMPN_19 | 373481 | 374857 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.87 | 99.93 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MLHCIMPN_17 | 172895 | 173941 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| MLHCIMPN_19 | 373481 | 374851 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| MLHCIMPN_19 | 372750 | 373268 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MLHCIMPN_21 | 495722 | 496903 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| MLHCIMPN_21 | 496918 | 497367 | capC | 3.75e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MLHCIMPN_9 | 34817 | 35953 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| MLHCIMPN_3 | 7450 | 8319 | pdxS | 1.63e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MLHCIMPN_20 | 756626 | 757402 | CodY | 1.29e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MLHCIMPN_20 | 254930 | 255322 | spxA1 | 2.37e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MLHCIMPN_17 | 153076 | 153273 | CspA | 1.31e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MLHCIMPN_18 | 192019 | 191825 | CspD | 2.07e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| MLHCIMPN_17 | 153076 | 153270 | CspR | 1.72e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| MLHCIMPN_21 | 873862 | 874734 | lipA (SAUSA300_0829) | 3.25e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |