Genome ID:GCA_000828495.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DICDKBPA_46 | 100671 | 101840 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| DICDKBPA_132 | 48158 | 50728 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| DICDKBPA_33 | 27532 | 28965 | lmrB | ARO:3002813 | lmrB | 98.95 | 100.00 | JYFL01000006.1 |
| DICDKBPA_17 | 4681 | 5019 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| DICDKBPA_17 | 4364 | 4681 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| DICDKBPA_64 | 274 | 1128 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DICDKBPA_131 | 79372 | 80748 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.35 | 100.00 | X08034 |
| DICDKBPA_64 | 276 | 1128 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| DICDKBPA_33 | 40854 | 41773 | mph(K) | Spiramycin, Telithromycin | 97.39 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DICDKBPA_131 | 79375 | 80748 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_003242953.1 |
| DICDKBPA_64 | 277 | 1128 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| DICDKBPA_62 | 44124 | 45764 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.62 | 100.00 | WP_003234144.1 |
| DICDKBPA_131 | 76873 | 77391 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DICDKBPA_92 | 32426 | 33364 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| DICDKBPA_158 | 42205 | 43386 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| DICDKBPA_92 | 36262 | 37047 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| DICDKBPA_161 | 1481 | 3244 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| DICDKBPA_158 | 43869 | 45011 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
| DICDKBPA_158 | 43401 | 43850 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| DICDKBPA_92 | 35040 | 36236 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391079 |
| DICDKBPA_92 | 25270 | 32406 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.43 | 100.00 | NP_391076 |
| DICDKBPA_38 | 10943 | 11584 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.82 | 100.00 | NP_390062 |
| DICDKBPA_92 | 33392 | 35011 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DICDKBPA_130 | 28028 | 26892 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| DICDKBPA_109 | 4287 | 5156 | pdxS | 1.94e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| DICDKBPA_86 | 156265 | 157041 | CodY | 2.24e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DICDKBPA_138 | 54027 | 54596 | ClpP | 6.86e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| DICDKBPA_47 | 51814 | 52206 | spxA1 | 9.75e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| DICDKBPA_47 | 51814 | 52206 | spx | 5.82e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| DICDKBPA_105 | 34633 | 34391 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| DICDKBPA_157 | 4017 | 4214 | CspA | 2.56e-33 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DICDKBPA_38 | 23546 | 23740 | CspD | 1.19e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| DICDKBPA_153 | 190853 | 191047 | CspB | 1.86e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |