Genome ID:GCA_000830595.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 8 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBDGHGEL_50 | 157812 | 158405 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| NBDGHGEL_7 | 157170 | 158339 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| NBDGHGEL_50 | 109940 | 111379 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| NBDGHGEL_4 | 90482 | 90820 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| NBDGHGEL_4 | 90165 | 90482 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| NBDGHGEL_49 | 17417 | 18619 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| NBDGHGEL_1 | 9388 | 11958 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| NBDGHGEL_65 | 285 | 1139 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NBDGHGEL_65 | 287 | 1139 | aadK | Streptomycin | 98.48 | 99.77 | M26879 |
| NBDGHGEL_50 | 97129 | 98048 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBDGHGEL_65 | 288 | 1139 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| NBDGHGEL_14 | 28943 | 30583 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.62 | 100.00 | WP_003234144.1 |
| NBDGHGEL_9 | 87978 | 88496 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.06 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NBDGHGEL_63 | 1649 | 2791 | capA | 0.0 | Capsule | Immune modulation | 99.65 | 100.00 | NP_391469 |
| NBDGHGEL_63 | 3274 | 4455 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| NBDGHGEL_51 | 99916 | 100854 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391077 |
| NBDGHGEL_51 | 103741 | 104526 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| NBDGHGEL_40 | 21414 | 23177 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| NBDGHGEL_63 | 2810 | 3259 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| NBDGHGEL_51 | 92760 | 99896 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.03 | 100.00 | NP_391076 |
| NBDGHGEL_51 | 102519 | 103715 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| NBDGHGEL_57 | 97596 | 98237 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.82 | 100.00 | NP_390062 |
| NBDGHGEL_51 | 100882 | 102501 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NBDGHGEL_64 | 31706 | 32842 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| NBDGHGEL_29 | 11187 | 10318 | pdxS | 1.94e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| NBDGHGEL_20 | 154854 | 154078 | CodY | 2.84e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NBDGHGEL_34 | 185809 | 186378 | ClpP | 1.50e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| NBDGHGEL_41 | 46116 | 45724 | spxA1 | 3.54e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| NBDGHGEL_41 | 46116 | 45724 | spx | 2.11e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| NBDGHGEL_44 | 34640 | 34398 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NBDGHGEL_37 | 4026 | 4223 | CspA | 6.69e-32 | cold shock protein | 89.39 | 100.00 | CAA62903 |
| NBDGHGEL_57 | 85744 | 85550 | CspD | 3.36e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| NBDGHGEL_57 | 85744 | 85547 | CspB | 6.97e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| NBDGHGEL_37 | 4026 | 4220 | CspR | 2.10e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |