Genome ID:GCA_000830635.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHICNLIJ_55 | 175727 | 176647 | mphK | ARO:3004541 | mphK | 98.04 | 100.00 | CP010314.1 |
| FHICNLIJ_55 | 162396 | 163835 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| FHICNLIJ_72 | 100731 | 101900 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| FHICNLIJ_7 | 85315 | 85653 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| FHICNLIJ_7 | 84998 | 85315 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| FHICNLIJ_50 | 46682 | 49252 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| FHICNLIJ_68 | 865 | 2067 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| FHICNLIJ_92 | 309 | 1163 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FHICNLIJ_92 | 311 | 1163 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| FHICNLIJ_55 | 175727 | 176647 | mph(K) | Spiramycin, Telithromycin | 97.61 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FHICNLIJ_55 | 175730 | 176647 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.04 | 100.00 | WP_003246254.1 |
| FHICNLIJ_18 | 29012 | 30652 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.99 | 100.00 | WP_003234144.1 |
| FHICNLIJ_92 | 312 | 1163 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| FHICNLIJ_28 | 71945 | 72337 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 93.13 | 75.72 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FHICNLIJ_80 | 275 | 1417 | capA | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | NP_391469 |
| FHICNLIJ_80 | 1900 | 3081 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| FHICNLIJ_35 | 73146 | 74084 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.57 | 100.00 | NP_391077 |
| FHICNLIJ_80 | 1436 | 1885 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| FHICNLIJ_35 | 69474 | 70259 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| FHICNLIJ_33 | 29184 | 30947 | dep/capD | 0.0 | Capsule | Immune modulation | 99.26 | 100.00 | NP_389723 |
| FHICNLIJ_35 | 74104 | 81240 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.82 | 100.00 | NP_391076 |
| FHICNLIJ_35 | 70285 | 71481 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| FHICNLIJ_2 | 111885 | 112526 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.97 | 100.00 | NP_390062 |
| FHICNLIJ_35 | 71499 | 73118 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.84 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FHICNLIJ_26 | 28075 | 26939 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| FHICNLIJ_24 | 4289 | 5158 | pdxS | 1.95e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| FHICNLIJ_54 | 106366 | 107142 | CodY | 1.30e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FHICNLIJ_6 | 45156 | 44587 | ClpP | 1.24e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| FHICNLIJ_12 | 38706 | 38314 | spxA1 | 3.91e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| FHICNLIJ_12 | 38706 | 38314 | spx | 2.33e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| FHICNLIJ_79 | 34633 | 34391 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| FHICNLIJ_18 | 71802 | 71605 | CspA | 3.27e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| FHICNLIJ_45 | 4125 | 3931 | CspD | 9.91e-30 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| FHICNLIJ_47 | 47572 | 47766 | CspB | 5.57e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |