Genome ID:GCA_000973605.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHALIAPI_1 | 2501447 | 2502301 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| PHALIAPI_1 | 2482148 | 2483350 | blt | ARO:3003006 | blt | 98.50 | 100.00 | L32599.1 |
| PHALIAPI_1 | 2298046 | 2299215 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| PHALIAPI_1 | 1327469 | 1327786 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| PHALIAPI_1 | 1327131 | 1327469 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| PHALIAPI_1 | 869789 | 872359 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| PHALIAPI_1 | 572873 | 574501 | vmlR | ARO:3004476 | vmlR | 95.38 | 99.09 | NC_000964.3 |
| PHALIAPI_1 | 314112 | 314705 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| PHALIAPI_1 | 263547 | 264980 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
| PHALIAPI_1 | 250727 | 251647 | mphK | ARO:3004541 | mphK | 98.04 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PHALIAPI_1 | 2501447 | 2502301 | aadK | Streptomycin | 98.25 | 100.00 | M26879 |
| PHALIAPI_1 | 250727 | 251647 | mph(K) | Spiramycin, Telithromycin | 97.39 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHALIAPI_1 | 250727 | 251644 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.04 | 100.00 | WP_003246254.1 |
| PHALIAPI_1 | 2501450 | 2502301 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| PHALIAPI_1 | 572879 | 574501 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 95.38 | 98.90 | WP_003234144.1 |
| PHALIAPI_1 | 3978392 | 3978910 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
| PHALIAPI_1 | 2005743 | 2008340 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PHALIAPI_1 | 3478204 | 3479385 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| PHALIAPI_1 | 3477740 | 3478189 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| PHALIAPI_1 | 3476579 | 3477721 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| PHALIAPI_1 | 3054069 | 3054854 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.98 | 100.00 | NP_391080 |
| PHALIAPI_1 | 2098433 | 2099074 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.75 | 100.00 | NP_390062 |
| PHALIAPI_1 | 3050233 | 3051171 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.72 | 100.00 | NP_391077 |
| PHALIAPI_1 | 3052847 | 3054043 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391079 |
| PHALIAPI_1 | 3043083 | 3050213 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.32 | 99.99 | NP_391076 |
| PHALIAPI_1 | 1960799 | 1962562 | dep/capD | 0.0 | Capsule | Immune modulation | 98.02 | 100.00 | NP_389723 |
| PHALIAPI_1 | 3051199 | 3052818 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.59 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHALIAPI_1 | 126864 | 128000 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PHALIAPI_1 | 19008 | 19877 | pdxS | 2.98e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PHALIAPI_1 | 1636764 | 1637540 | CodY | 3.26e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PHALIAPI_1 | 3321704 | 3322273 | ClpP | 2.41e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |