Genome ID:GCA_001247635.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDFAHGHL_1 | 136028 | 139609 | Bacillus subtilis rpoB mutants conferring resistance to rifampin | ARO:3007073 | Bsub_rpoB_RIF | 98.24 | 100.00 | AL009126.3 |
| MDFAHGHL_12 | 36975 | 38024 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDFAHGHL_12 | 36975 | 38010 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDFAHGHL_12 | 36975 | 38021 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MDFAHGHL_8 | 353641 | 354822 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| MDFAHGHL_8 | 353177 | 353626 | capC | 1.44e-117 | Capsule | Immune modulation | 84.03 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDFAHGHL_1 | 146982 | 148118 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| MDFAHGHL_1 | 25762 | 26631 | pdxS | 2.61e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MDFAHGHL_16 | 367389 | 368165 | CodY | 6.35e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MDFAHGHL_14 | 365204 | 365596 | spxA1 | 8.69e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MDFAHGHL_12 | 14569 | 14766 | CspA | 1.02e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MDFAHGHL_5 | 11848 | 12042 | CspD | 9.33e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| MDFAHGHL_5 | 11848 | 12045 | CspB | 1.94e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| MDFAHGHL_12 | 14569 | 14763 | CspR | 1.34e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| MDFAHGHL_7 | 130352 | 129480 | lipA (SAUSA300_0829) | 4.52e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |