Genome ID:GCA_001286745.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLOJDAAJ_36 | 97549 | 100119 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| PLOJDAAJ_58 | 87659 | 88828 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| PLOJDAAJ_6 | 56262 | 56600 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| PLOJDAAJ_6 | 55945 | 56262 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| PLOJDAAJ_48 | 45990 | 47636 | vmlR | ARO:3004476 | vmlR | 99.27 | 100.18 | NC_000964.3 |
| PLOJDAAJ_2 | 43913 | 45352 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| PLOJDAAJ_2 | 31099 | 32019 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| PLOJDAAJ_13 | 20091 | 20684 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| PLOJDAAJ_121 | 8153 | 9355 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| PLOJDAAJ_75 | 6072 | 6926 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLOJDAAJ_2 | 31099 | 32019 | mph(K) | Spiramycin, Telithromycin | 99.24 | 100.00 | NC_000964 |
| PLOJDAAJ_75 | 6072 | 6926 | aadK | Streptomycin | 98.48 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLOJDAAJ_48 | 45993 | 47636 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 99.27 | 100.00 | WP_003234144.1 |
| PLOJDAAJ_2 | 31099 | 32016 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| PLOJDAAJ_75 | 6075 | 6926 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| PLOJDAAJ_37 | 4317 | 4835 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| PLOJDAAJ_88 | 2 | 2452 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.54 | 94.35 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PLOJDAAJ_1 | 109917 | 111098 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| PLOJDAAJ_71 | 76736 | 77377 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| PLOJDAAJ_22 | 111780 | 112976 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.42 | 100.00 | NP_391079 |
| PLOJDAAJ_22 | 113002 | 113787 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| PLOJDAAJ_82 | 6624 | 8387 | dep/capD | 0.0 | Capsule | Immune modulation | 99.09 | 100.00 | NP_389723 |
| PLOJDAAJ_1 | 111581 | 112723 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| PLOJDAAJ_22 | 102010 | 109146 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.70 | 100.00 | NP_391076 |
| PLOJDAAJ_1 | 111113 | 111562 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
| PLOJDAAJ_22 | 109166 | 110104 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.62 | 100.00 | NP_391077 |
| PLOJDAAJ_22 | 110132 | 111751 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLOJDAAJ_45 | 28044 | 26908 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PLOJDAAJ_98 | 3306 | 2437 | pdxS | 4.72e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PLOJDAAJ_67 | 41132 | 40356 | CodY | 7.62e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PLOJDAAJ_1 | 267646 | 267077 | ClpP | 2.69e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| PLOJDAAJ_28 | 37350 | 36958 | spxA1 | 2.88e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| PLOJDAAJ_28 | 37350 | 36958 | spx | 1.72e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| PLOJDAAJ_5 | 20549 | 20791 | SpoVG | 4.74e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PLOJDAAJ_50 | 21290 | 21487 | CspA | 9.35e-33 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PLOJDAAJ_71 | 65505 | 65311 | CspD | 2.33e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PLOJDAAJ_71 | 65505 | 65308 | CspB | 4.84e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |