Genome ID：GCA_001286865.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
12	10	8	17.55

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
EMPJECPA_11	198566	198904	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
EMPJECPA_11	198249	198566	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
EMPJECPA_6	109572	110492	mphK	ARO:3004541	mphK	97.71	100.00	CP010314.1
EMPJECPA_6	96240	97679	lmrB	ARO:3002813	lmrB	99.16	100.42	JYFL01000006.1
EMPJECPA_16	83714	84883	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
EMPJECPA_4	56365	58011	vmlR	ARO:3004476	vmlR	99.27	100.18	NC_000964.3
EMPJECPA_6	46592	47185	tmrB	ARO:3003059	tmrB	98.48	100.00	AL009126.3
EMPJECPA_56	27316	29886	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.53	100.00	AL009126.3
EMPJECPA_26	10021	10875	aadK	ARO:3002627	aadK	97.89	100.00	AL009126.1
EMPJECPA_51	9309	10511	blt	ARO:3003006	blt	99.00	100.00	L32599.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
EMPJECPA_26	10021	10875	aadK	Streptomycin	98.48	100.00	M26879
EMPJECPA_6	109572	110492	mph(K)	Spiramycin, Telithromycin	98.05	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
EMPJECPA_4	56368	58011	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	99.27	100.00	WP_003234144.1
EMPJECPA_26	10021	10872	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.89	100.00	WP_003229862.1
EMPJECPA_6	109575	110492	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	97.71	100.00	WP_003246254.1
EMPJECPA_12	38164	38682	satA	streptothricin N-acetyltransferase SatA	BLASTX	91.91	100.00	WP_003242546.1
EMPJECPA_21	58736	60832	rphC	rifamycin-inactivating phosphotransferase RphC	PARTIAL_CONTIG_ENDX	80.11	80.76	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
EMPJECPA_59	1232	1873	hlyIII	0.0	Hemolysin III	Exotoxin	99.84	100.00	NP_390062
EMPJECPA_44	14402	15583	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
EMPJECPA_2	112769	113554	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.49	100.00	NP_391080
EMPJECPA_2	111547	112743	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.25	100.00	NP_391079
EMPJECPA_2	108933	109871	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.15	100.00	NP_391077
EMPJECPA_21	8229	9992	dep/capD	0.0	Capsule	Immune modulation	98.98	100.00	NP_389723
EMPJECPA_44	16066	17208	capA	0.0	Capsule	Immune modulation	98.86	100.00	NP_391469
EMPJECPA_44	15598	16047	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470
EMPJECPA_2	101777	108913	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.53	100.00	NP_391076
EMPJECPA_2	109899	111518	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	96.73	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
EMPJECPA_41	27991	26855	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
EMPJECPA_46	4299	5168	pdxS	4.64e-152	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
EMPJECPA_47	17561	16785	CodY	1.03e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
EMPJECPA_1	111410	111979	ClpP	1.46e-99	part of proteolytic complex	81.05	97.44	BAB94595
EMPJECPA_19	38795	38403	spxA1	5.72e-71	redox-responsive transcription factor	83.97	100.00	AAF21893
EMPJECPA_5	20547	20789	SpoVG	4.74e-39	RNA-binding protein	81.48	79.41	AAT02994
EMPJECPA_4	8753	8950	CspA	3.75e-32	cold shock protein	90.91	100.00	CAA62903
EMPJECPA_48	17603	17409	CspD	4.93e-29	cold shock protein	80.00	98.48	CAC99957
EMPJECPA_48	17603	17406	CspB	1.02e-28	cold shock protein	80.30	100.00	CAD00094