Genome ID：GCA_001286885.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
12	10	8	17.55

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PAAFKCII_15	86850	88289	lmrB	ARO:3002813	lmrB	99.37	100.42	JYFL01000006.1
PAAFKCII_21	83698	84867	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
PAAFKCII_15	74036	74956	mphK	ARO:3004541	mphK	99.02	100.00	CP010314.1
PAAFKCII_37	70655	70993	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
PAAFKCII_37	70338	70655	ykkD	ARO:3003064	ykkD	99.05	100.00	AL009126.1
PAAFKCII_10	31842	33488	vmlR	ARO:3004476	vmlR	99.27	100.18	NC_000964.3
PAAFKCII_7	27321	29891	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.77	100.00	AL009126.3
PAAFKCII_20	20091	20684	tmrB	ARO:3003059	tmrB	98.48	100.00	AL009126.3
PAAFKCII_39	10532	11386	aadK	ARO:3002627	aadK	97.89	100.00	AL009126.1
PAAFKCII_28	3384	4586	blt	ARO:3003006	blt	99.50	100.00	L32599.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PAAFKCII_15	74036	74956	mph(K)	Spiramycin, Telithromycin	99.24	100.00	NC_000964
PAAFKCII_39	10532	11386	aadK	Streptomycin	98.48	100.00	M26879

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PAAFKCII_10	31842	33485	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	99.27	100.00	WP_003234144.1
PAAFKCII_15	74036	74953	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	99.02	100.00	WP_003246254.1
PAAFKCII_39	10535	11386	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	97.89	100.00	WP_003229862.1
PAAFKCII_22	21137	21655	satA	streptothricin N-acetyltransferase SatA	BLASTX	93.64	100.00	WP_003242546.1
PAAFKCII_38	1219	3816	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.06	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PAAFKCII_18	164226	165407	capB	0.0	Capsule	Immune modulation	99.75	100.00	NP_391471
PAAFKCII_2	34914	35555	hlyIII	0.0	Hemolysin III	Exotoxin	99.69	100.00	NP_390062
PAAFKCII_14	73157	74353	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.42	100.00	NP_391079
PAAFKCII_14	72346	73131	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
PAAFKCII_58	30649	32412	dep/capD	0.0	Capsule	Immune modulation	99.09	100.00	NP_389723
PAAFKCII_18	165890	167032	capA	0.0	Capsule	Immune modulation	98.95	100.00	NP_391469
PAAFKCII_14	76987	84123	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.70	100.00	NP_391076
PAAFKCII_18	165422	165871	capC	0.0	Capsule	Immune modulation	98.67	100.00	NP_391470
PAAFKCII_14	76029	76967	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	98.62	100.00	NP_391077
PAAFKCII_14	74382	76001	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	97.41	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PAAFKCII_12	31708	32844	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
PAAFKCII_43	4334	5203	pdxS	4.72e-152	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PAAFKCII_32	1265	489	CodY	1.77e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
PAAFKCII_8	141292	140723	ClpP	2.04e-99	part of proteolytic complex	81.05	97.44	BAB94595
PAAFKCII_19	37350	36958	spxA1	1.91e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
PAAFKCII_19	37350	36958	spx	1.14e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
PAAFKCII_42	20549	20791	SpoVG	4.74e-39	RNA-binding protein	81.48	79.41	AAT02994
PAAFKCII_10	79814	79617	CspA	3.83e-32	cold shock protein	90.91	100.00	CAA62903
PAAFKCII_2	46786	46980	CspD	5.92e-28	cold shock protein	80.00	98.48	CAC99957
PAAFKCII_2	46786	46983	CspB	1.23e-27	cold shock protein	80.30	100.00	CAD00094