Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLCCKAFL_24 | 39248 | 40297 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLCCKAFL_24 | 39262 | 40297 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.03 | 98.67 | KR610408 |
| PLCCKAFL_35 | 28482 | 29858 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLCCKAFL_24 | 39254 | 40297 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| PLCCKAFL_35 | 28482 | 29852 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PLCCKAFL_19 | 19999 | 21180 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| PLCCKAFL_19 | 21195 | 21644 | capC | 8.48e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLCCKAFL_14 | 31670 | 32806 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| PLCCKAFL_15 | 4301 | 5170 | pdxS | 6.87e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PLCCKAFL_18 | 117646 | 118422 | CodY | 2.49e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PLCCKAFL_21 | 156357 | 156749 | spxA1 | 4.18e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PLCCKAFL_24 | 70976 | 70779 | CspA | 4.62e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PLCCKAFL_22 | 135349 | 135155 | CspD | 3.66e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PLCCKAFL_22 | 135349 | 135152 | CspB | 7.58e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| PLCCKAFL_24 | 70976 | 70782 | CspR | 6.05e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| PLCCKAFL_34 | 16987 | 16115 | lipA (SAUSA300_0829) | 5.08e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |