Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 7 | 7.14 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KODCOHLO_6 | 100429 | 101805 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.56 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KODCOHLO_6 | 100435 | 101805 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KODCOHLO_33 | 133280 | 134461 | capB | 0.0 | Capsule | Immune modulation | 82.38 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KODCOHLO_8 | 31668 | 32804 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| KODCOHLO_143 | 4339 | 5208 | pdxS | 4.47e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KODCOHLO_29 | 119442 | 120218 | CodY | 1.87e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KODCOHLO_13 | 35958 | 35566 | spxA1 | 2.66e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KODCOHLO_49 | 16013 | 16210 | CspA | 2.56e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KODCOHLO_47 | 27656 | 27850 | CspD | 8.06e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KODCOHLO_47 | 27656 | 27853 | CspB | 1.67e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KODCOHLO_49 | 16013 | 16207 | CspR | 3.35e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KODCOHLO_9 | 137291 | 136419 | lipA (SAUSA300_0829) | 8.73e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |