Genome ID:GCA_001294785.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEDJFLCG_11 | 6643 | 7692 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEDJFLCG_11 | 6643 | 7678 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
| IEDJFLCG_18 | 196525 | 197901 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEDJFLCG_11 | 6643 | 7689 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| IEDJFLCG_18 | 196531 | 197901 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.87 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IEDJFLCG_31 | 493413 | 494594 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
| IEDJFLCG_31 | 494609 | 495058 | capC | 6.83e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEDJFLCG_21 | 28221 | 27085 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| IEDJFLCG_26 | 12519 | 11650 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| IEDJFLCG_16 | 123600 | 124376 | CodY | 2.59e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| IEDJFLCG_22 | 253646 | 254038 | spxA1 | 8.08e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| IEDJFLCG_12 | 66741 | 66938 | CspA | 4.35e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| IEDJFLCG_32 | 35878 | 35684 | CspD | 1.21e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| IEDJFLCG_32 | 35878 | 35681 | CspB | 2.51e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| IEDJFLCG_12 | 66741 | 66935 | CspR | 5.70e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| IEDJFLCG_15 | 126162 | 125290 | lipA (SAUSA300_0829) | 4.34e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |