Genome ID:GCA_001294785.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
2277.55

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
IEDJFLCG_1166437692clbAARO:3002814clbA99.43100.00CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
IEDJFLCG_1166437678cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.6198.67KR610408
IEDJFLCG_18196525197901tet(L)Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline86.86100.00X08034

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
IEDJFLCG_1166437689clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX99.43100.00WP_012116915.1
IEDJFLCG_18196531197901tet(L)tetracycline efflux MFS transporter Tet(L)BLASTX86.8799.78WP_003242953.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
IEDJFLCG_31493413494594capB0.0CapsuleImmune modulation82.4699.66NP_391471
IEDJFLCG_31494609495058capC6.83e-116CapsuleImmune modulation83.8199.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
IEDJFLCG_212822127085tufA0.0elongation factor Tu86.8195.69AHM69299
IEDJFLCG_261251911650pdxS1.36e-152encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
IEDJFLCG_16123600124376CodY2.59e-125nutrient-responsive regulator81.08100.00ACJ80679
IEDJFLCG_22253646254038spxA18.08e-70redox-responsive transcription factor83.21100.00AAF21893
IEDJFLCG_126674166938CspA4.35e-32cold shock protein90.91100.00CAA62903
IEDJFLCG_323587835684CspD1.21e-28cold shock protein80.0098.48CAC99957
IEDJFLCG_323587835681CspB2.51e-28cold shock protein80.30100.00CAD00094
IEDJFLCG_126674166935CspR5.70e-27cold shock protein80.0098.48AAO82613
IEDJFLCG_15126162125290lipA (SAUSA300_0829)4.34e-163lipoic acid synthetase80.8295.41ABD22039