Genome ID:GCA_001469685.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 8 | 8.31 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHHGEFGI_2 | 272309 | 273685 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.93 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_2 | 272309 | 273679 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.87 | 99.78 | WP_003242953.1 |
| JHHGEFGI_2 | 271578 | 272096 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_3 | 28058 | 29239 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JHHGEFGI_18 | 27969 | 26833 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| JHHGEFGI_24 | 12423 | 11554 | pdxS | 8.73e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| JHHGEFGI_1 | 336344 | 335568 | CodY | 7.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JHHGEFGI_5 | 152259 | 151867 | spxA1 | 6.94e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| JHHGEFGI_6 | 77500 | 77303 | CspA | 1.32e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JHHGEFGI_4 | 216431 | 216237 | CspD | 9.37e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JHHGEFGI_15 | 43859 | 44053 | CspB | 1.67e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| JHHGEFGI_6 | 77500 | 77306 | CspR | 1.73e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| JHHGEFGI_3 | 381892 | 382764 | lipA (SAUSA300_0829) | 1.27e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |