Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 4 | 4.58 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAAJNGED_1 | 2432723 | 2433772 | clbA | ARO:3002814 | clbA | 97.13 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CAAJNGED_1 | 2432737 | 2433772 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.64 | 98.67 | KR610408 |
| CAAJNGED_1 | 685309 | 686685 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAAJNGED_1 | 2432729 | 2433772 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.41 | 99.71 | WP_012116915.1 |
| CAAJNGED_1 | 685309 | 686679 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CAAJNGED_1 | 3455821 | 3457002 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAAJNGED_1 | 2823839 | 2822703 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| CAAJNGED_1 | 2938619 | 2937750 | pdxS | 2.12e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CAAJNGED_1 | 1585792 | 1585016 | CodY | 4.65e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CAAJNGED_1 | 3089261 | 3088389 | lipA (SAUSA300_0829) | 1.26e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |