Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLKLIMOP_23 | 159694 | 160740 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LLKLIMOP_23 | 159694 | 160737 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| LLKLIMOP_12 | 186808 | 188184 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLKLIMOP_23 | 159694 | 160737 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| LLKLIMOP_12 | 186808 | 188178 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| LLKLIMOP_23 | 157425 | 157943 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| LLKLIMOP_13 | 206783 | 209380 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LLKLIMOP_14 | 377325 | 378506 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| LLKLIMOP_14 | 378521 | 378970 | capC | 3.25e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLKLIMOP_17 | 27563 | 26427 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| LLKLIMOP_20 | 4288 | 5157 | pdxS | 6.34e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| LLKLIMOP_15 | 335655 | 336431 | CodY | 3.61e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LLKLIMOP_27 | 298767 | 299159 | spxA1 | 4.44e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| LLKLIMOP_23 | 143198 | 143395 | CspA | 3.19e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| LLKLIMOP_12 | 611735 | 611541 | CspD | 1.84e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| LLKLIMOP_12 | 611735 | 611538 | CspB | 3.82e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| LLKLIMOP_23 | 143198 | 143392 | CspR | 1.58e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |