Genome ID:GCA_001593785.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 3 | 4.69 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLKAJAN_1 | 1256740 | 1257789 | clbA | ARO:3002814 | clbA | 97.13 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFLKAJAN_1 | 1256740 | 1257775 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.74 | 98.67 | KR610408 |
| GFLKAJAN_1 | 3265319 | 3266695 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLKAJAN_1 | 1256740 | 1257783 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.41 | 99.71 | WP_012116915.1 |
| GFLKAJAN_1 | 3265325 | 3266695 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
| GFLKAJAN_1 | 2552377 | 2554971 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.34 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GFLKAJAN_1 | 214342 | 215523 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| GFLKAJAN_1 | 213878 | 214327 | capC | 1.48e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFLKAJAN_1 | 860137 | 861273 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| GFLKAJAN_1 | 745520 | 746389 | pdxS | 3.35e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| GFLKAJAN_1 | 2346928 | 2347704 | CodY | 4.74e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |