Genome ID：GCA_001619535.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
16	10	8	20.49

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
HFLGGCGD_2	676784	677953	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
HFLGGCGD_1	494334	494672	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
HFLGGCGD_1	494017	494334	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
HFLGGCGD_2	454433	455635	blt	ARO:3003006	blt	100.00	100.00	L32599.1
HFLGGCGD_2	436072	436926	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
HFLGGCGD_31	276623	279193	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
HFLGGCGD_46	50773	51693	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1
HFLGGCGD_4	47454	49097	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
HFLGGCGD_7	44877	45470	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
HFLGGCGD_46	37439	38878	lmrB	ARO:3002813	lmrB	99.79	100.42	JYFL01000006.1
HFLGGCGD_15	3448	4308	TEM-1	ARO:3000873	TEM-1	100.00	100.00	AL513383.1
HFLGGCGD_15	1145	1879	ErmC	ARO:3000250	ErmC	97.54	100.00	M12730.1
HFLGGCGD_17	961	1713	ANT(9)-Ib	ARO:3007401	ANT(9)-Ib	99.60	98.04	M69221.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
HFLGGCGD_2	436072	436926	aadK	Streptomycin	100.00	100.00	M26879
HFLGGCGD_17	946	1713	ant(9)-Ia	Spectinomycin	100.00	100.00	M69221
HFLGGCGD_15	3448	4308	blaTEM-1A	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	100.00	100.00	HM749966
HFLGGCGD_15	1145	1879	erm(C)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	V01278
HFLGGCGD_46	50773	51693	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
HFLGGCGD_23	330973	332349	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
HFLGGCGD_2	436072	436923	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
HFLGGCGD_17	946	1710	ant(9)-Ib	aminoglycoside nucleotidyltransferase ANT(9)-Ib	EXACTX	100.00	100.00	WP_063840673.1
HFLGGCGD_15	3451	4308	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	ALLELEX	100.00	100.00	WP_000027057.1
HFLGGCGD_15	1145	1876	erm(C)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C)	EXACTX	100.00	100.00	WP_007410443.1
HFLGGCGD_46	50776	51693	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
HFLGGCGD_23	328455	328973	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
HFLGGCGD_23	330976	332349	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
HFLGGCGD_4	47457	49097	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
HFLGGCGD_42	54885	57479	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
HFLGGCGD_47	157307	158449	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
HFLGGCGD_47	155643	156824	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
HFLGGCGD_47	156839	157288	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
HFLGGCGD_42	8227	9990	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
HFLGGCGD_13	112881	113666	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
HFLGGCGD_13	109045	109983	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
HFLGGCGD_13	111659	112855	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
HFLGGCGD_13	110011	111630	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
HFLGGCGD_13	101889	109025	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
HFLGGCGD_2	876664	877305	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
HFLGGCGD_5	31737	32873	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
HFLGGCGD_9	11281	10412	pdxS	1.12e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
HFLGGCGD_1	181070	180294	CodY	7.55e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
HFLGGCGD_13	367604	368173	ClpP	2.93e-99	part of proteolytic complex	81.05	97.44	BAB94595
HFLGGCGD_1	643491	643099	spxA1	5.94e-70	redox-responsive transcription factor	83.97	100.00	AAF21893
HFLGGCGD_1	643491	643099	spx	3.54e-68	essential gene which is a thiol/oxidative stress sensor	80.15	100.00	BAB57159
HFLGGCGD_6	20597	20839	SpoVG	2.73e-38	RNA-binding protein	80.25	79.41	AAT02994
HFLGGCGD_4	1982	2179	CspA	3.38e-32	cold shock protein	90.91	100.00	CAA62903
HFLGGCGD_2	864702	864508	CspD	5.69e-28	cold shock protein	81.54	98.48	CAC99957