Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 7 | 8.31 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCCBHEMI_35 | 23544 | 24593 | clbA | ARO:3002814 | clbA | 92.84 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MCCBHEMI_35 | 23544 | 24593 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.06 | 99.90 | KR610408 |
| MCCBHEMI_31 | 375567 | 376943 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.22 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MCCBHEMI_35 | 23544 | 24590 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.84 | 100.00 | WP_012116915.1 |
| MCCBHEMI_31 | 375567 | 376937 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| MCCBHEMI_35 | 21281 | 21799 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| MCCBHEMI_1 | 250247 | 252844 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MCCBHEMI_23 | 497699 | 498880 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| MCCBHEMI_23 | 497235 | 497684 | capC | 1.18e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MCCBHEMI_8 | 27580 | 26444 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| MCCBHEMI_17 | 4470 | 5339 | pdxS | 6.49e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MCCBHEMI_1 | 450841 | 450065 | CodY | 6.96e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MCCBHEMI_12 | 102471 | 102079 | spxA1 | 4.15e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| MCCBHEMI_35 | 5560 | 5757 | CspA | 7.43e-33 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| MCCBHEMI_20 | 39910 | 39716 | CspB | 9.23e-28 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| MCCBHEMI_35 | 5560 | 5754 | CspR | 3.68e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| MCCBHEMI_23 | 136675 | 135809 | lipA (SAUSA300_0829) | 1.30e-161 | lipoic acid synthetase | 81.03 | 94.75 | ABD22039 |