Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGOOKDBC_11 | 48451 | 49497 | clbA | ARO:3002814 | clbA | 93.35 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JGOOKDBC_11 | 48454 | 49497 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.71 | 99.33 | KR610408 |
| JGOOKDBC_10 | 412301 | 413677 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.22 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGOOKDBC_11 | 48454 | 49497 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.82 | 99.71 | WP_012116915.1 |
| JGOOKDBC_10 | 412301 | 413671 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| JGOOKDBC_11 | 51245 | 51763 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.08 | 100.00 | WP_003242546.1 |
| JGOOKDBC_8 | 129943 | 132540 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JGOOKDBC_9 | 502970 | 504151 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| JGOOKDBC_9 | 504166 | 504615 | capC | 7.98e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGOOKDBC_13 | 31774 | 32910 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| JGOOKDBC_15 | 12595 | 11726 | pdxS | 6.45e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| JGOOKDBC_8 | 371992 | 371216 | CodY | 9.70e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JGOOKDBC_8 | 912989 | 912597 | spxA1 | 1.53e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| JGOOKDBC_11 | 71162 | 70965 | CspA | 5.94e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| JGOOKDBC_11 | 71162 | 70968 | CspR | 2.95e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| JGOOKDBC_9 | 865010 | 865882 | lipA (SAUSA300_0829) | 3.22e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |