Genome ID：GCA_002073835.2

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
4	22	28	35.83

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
CCKGGDKK_1	1807152	1807889	ErmB	ARO:3000375	ErmB	97.96	98.79	AF242872.1
CCKGGDKK_1	1804126	1806045	tet(M)	ARO:3000186	tet(M)	99.37	100.00	AB039845.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CCKGGDKK_1	1807152	1807889	erm(B)	Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	U86375
CCKGGDKK_1	293153	294370	mef(A)	Erythromycin, Azithromycin	100.00	100.00	U83667
CCKGGDKK_1	291570	293033	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	99.93	100.00	AF274302
CCKGGDKK_1	1804126	1806045	tet(M)	Doxycycline, Tetracycline, Minocycline	99.90	100.00	X75073

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CCKGGDKK_1	1807152	1807886	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	EXACTX	100.00	100.00	WP_001038790.1
CCKGGDKK_1	293156	294370	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
CCKGGDKK_1	1804126	1806042	tet(M)	tetracycline resistance ribosomal protection protein Tet(M)	EXACTX	100.00	100.00	WP_000691727.1
CCKGGDKK_1	291573	293033	msr(D)	ABC-F type ribosomal protection protein Msr(D)	BLASTX	99.79	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
CCKGGDKK_1	2240903	2242363	STER_RS05320	0.0	Capsule	Immune modulation	96.85	100.00	WP_011681177
CCKGGDKK_1	2240903	2242363	STU_RS14650	0.0	Capsule	Immune modulation	96.58	100.21	WP_011226049
CCKGGDKK_1	2240903	2242363	STR_RS05265	0.0	Capsule	Immune modulation	95.89	100.21	WP_041827043
CCKGGDKK_1	2237298	2238663	STER_RS05300	0.0	Capsule	Immune modulation	95.39	99.85	WP_011681173
CCKGGDKK_1	1558958	1559809	rfbD	0.0	Capsule	Immune modulation	95.19	100.00	WP_014621820
CCKGGDKK_1	2238720	2239460	STER_RS05305	0.0	Capsule	Immune modulation	95.14	100.00	WP_011681174
CCKGGDKK_1	2238720	2239460	STU_RS14635	0.0	Capsule	Immune modulation	94.74	100.00	WP_011226046
CCKGGDKK_1	2237296	2238663	STU_RS14630	0.0	Capsule	Immune modulation	94.37	100.00	WP_011226045
CCKGGDKK_1	2238725	2239460	STR_RS05250	0.0	Capsule	Immune modulation	94.16	98.13	WP_011227246
CCKGGDKK_1	2240171	2240902	STER_RS05315	0.0	Capsule	Immune modulation	94.13	100.00	WP_011681176
CCKGGDKK_1	818145	819428	tig/ropA	0.0	Trigger factor	Stress survival	94.00	100.00	WP_011225339
CCKGGDKK_1	2240171	2240902	STU_RS14645	0.0	Capsule	Immune modulation	93.72	100.00	WP_011226048
CCKGGDKK_1	2240171	2240902	STR_RS05260	0.0	Capsule	Immune modulation	93.03	100.00	WP_011227248
CCKGGDKK_1	1561997	1562806	STU_RS16245	0.0	Capsule	Immune modulation	92.85	99.88	WP_002948020
CCKGGDKK_1	1565075	1566831	STU_RS16230	0.0	Capsule	Immune modulation	92.60	98.43	WP_011226325
CCKGGDKK_1	1561057	1562013	STU_RS16250	0.0	Capsule	Immune modulation	92.59	99.90	WP_011226328
CCKGGDKK_1	1559912	1561060	STU_RS16255	0.0	Capsule	Immune modulation	92.26	99.91	WP_041828290
CCKGGDKK_1	1562806	1564011	STU_RS16240	0.0	Capsule	Immune modulation	92.12	100.00	WP_011226326
CCKGGDKK_1	143270	143863	STR_RS05880	0.0	Capsule	Immune modulation	91.58	100.00	WP_011226149
CCKGGDKK_1	143270	143863	STER_RS06030	0.0	Capsule	Immune modulation	91.41	100.00	WP_011226149
CCKGGDKK_1	143270	143863	STU_RS15260	0.0	Capsule	Immune modulation	91.41	100.00	WP_011226149
CCKGGDKK_1	1564032	1565078	STU_RS16235	0.0	Capsule	Immune modulation	91.38	99.43	WP_002948022
CCKGGDKK_1	143863	144732	rfbA	0.0	Capsule	Immune modulation	91.03	100.00	WP_011681286
CCKGGDKK_1	914226	915065	cbpD	0.0	Autolysin	Exoenzyme	90.59	100.00	WP_011226733
CCKGGDKK_1	2130109	2131767	fbp54	0.0	FBPs	Adherence	90.24	99.94	WP_011227179
CCKGGDKK_1	2239470	2240162	STR_RS05255	0.0	Capsule	Immune modulation	88.76	99.86	WP_011227247
CCKGGDKK_1	2239470	2240162	STU_RS14640	0.0	Capsule	Immune modulation	88.76	99.86	WP_011226047
CCKGGDKK_1	318366	319669	eno	0.0	Streptococcal enolase	Exoenzyme	88.24	99.54	WP_000022832
CCKGGDKK_1	2239470	2240162	STER_RS05310	0.0	Capsule	Immune modulation	88.18	99.86	WP_011681175
CCKGGDKK_1	1235674	1236684	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	87.36	99.80	WP_002986042
CCKGGDKK_1	141953	142999	rfbB	0.0	Capsule	Immune modulation	84.06	99.90	WP_002263087
CCKGGDKK_1	1974498	1975259	srtA	0.0	Sortase A	Exoenzyme	83.90	99.74	-
CCKGGDKK_1	2228600	2229183	SPD_RS01775	1.31e-156	Capsule	Immune modulation	84.10	96.20	WP_001819836

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
CCKGGDKK_1	1983389	1984462	MntE	0.0	manganese homeostasis	96.09	99.72	ABF32167
CCKGGDKK_1	1971810	1970836	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.00	99.09	AAK75326
CCKGGDKK_1	1357302	1354996	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.41	99.22	AAK74619
CCKGGDKK_1	1840341	1838860	SPD_0310	0.0	UPF0371 protein SPD_0310	93.12	100.00	ABJ54480
CCKGGDKK_1	416944	415976	spr0084	0.0	pathogenitcity related	92.57	98.48	AAK98888
CCKGGDKK_1	2002450	2004696	metE	0.0	methionine biosynthesis enzymes	92.39	100.00	AAK74738
CCKGGDKK_1	929489	928518	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.36	100.00	ABF36968
CCKGGDKK_1	170117	168387	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
CCKGGDKK_1	1518614	1519765	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
CCKGGDKK_1	1547021	1549009	uvrB	0.0	excinuclease ABC, B subunit	89.44	100.00	AE014259_2
CCKGGDKK_1	965039	966517	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.42	100.00	ADE32434
CCKGGDKK_1	319669	318368	Eno	0.0	enolase	86.44	99.77	ABP90468
CCKGGDKK_1	2007615	2005906	PGM	0.0	phosphoglucomutase	84.94	99.65	ACH87041
CCKGGDKK_1	894508	893417	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
CCKGGDKK_1	1180436	1179426	pdh	0.0	pyruvate dehydrogenase	82.79	99.70	ABP91006
CCKGGDKK_1	2147329	2145968	mnmE	0.0	central tRNA-modifying GTPase	82.46	99.56	ABP90420
CCKGGDKK_1	334075	333185	bglB	2.81e-177	putative phospho--glucosidase	87.88	99.66	AAK33487
CCKGGDKK_1	2004883	2005740	metF	1.02e-168	methionine biosynthesis enzymes	88.11	99.31	AAK74739
CCKGGDKK_1	2046956	2045994	SP_0676	1.85e-168	transcription facot	80.69	99.69	AAK74821
CCKGGDKK_1	1895759	1896430	rr01	4.85e-126	response regulator	84.82	99.56	CAB54566
CCKGGDKK_1	29326	28622	covR	1.01e-125	responder protein	85.53	100.00	AAK71319
CCKGGDKK_1	2011583	2012254	ciaR	1.01e-123	two component system response regulator	85.71	99.12	AIK75708
CCKGGDKK_1	2011583	2012251	CiaR	1.25e-123	two-component response regulator	87.00	99.55	AAK74935
CCKGGDKK_1	29326	28622	walR	2.29e-119	DNA-binding response regulator	82.13	100.00	ANC99504
CCKGGDKK_1	662742	662056	CovR	4.94e-119	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
CCKGGDKK_1	893242	892868	SpxA2	6.80e-70	transcriptional regulator	92.00	94.70	ERL21461
CCKGGDKK_1	2158797	2159198	SpxA1	4.29e-69	transcriptional regulator	82.84	100.00	ERL19273
CCKGGDKK_1	833527	833114	GrpE	4.16e-66	protein grpE	81.16	80.59	ABP89267
CCKGGDKK_1	817978	817487	RopE (M5005_Spy_1611)	1.09e-71	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
CCKGGDKK_1	1357302	1355002	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.09	98.08	MYN69560
CCKGGDKK_1	1069551	1070570	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451