Genome ID:GCA_002079705.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_55 | 6112 | 6759 | catA8 | ARO:3004658 | catA8 | 98.60 | 100.00 | JQ922409.1 |
| BHLIKPEM_41 | 1711 | 3087 | tet(L) | ARO:3000179 | tet(L) | 99.78 | 100.00 | M11036.1 |
| BHLIKPEM_55 | 264 | 2189 | tet(M) | ARO:3000186 | tet(M) | 98.44 | 100.31 | AB039845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BHLIKPEM_41 | 1711 | 3087 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | M29725 |
| BHLIKPEM_55 | 264 | 2189 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | AM990992 |
| BHLIKPEM_55 | 6112 | 6759 | cat | Chloramphenicol | 99.54 | 100.00 | U35036 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_41 | 1714 | 3087 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_001574277.1 |
| BHLIKPEM_55 | 267 | 2189 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.53 | 100.00 | WP_000691736.1 |
| BHLIKPEM_55 | 6115 | 6759 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 99.07 | 100.00 | WP_002352254.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_12 | 35000 | 35707 | WalR | 2.08e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| BHLIKPEM_24 | 71104 | 70907 | CspR | 1.04e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| BHLIKPEM_24 | 71104 | 70910 | CspA | 1.79e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |